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Aliases for SNORD96A Gene

Subcategory (RNA class) for SNORD96A Gene


Quality Score for this RNA gene is


Aliases for SNORD96A Gene

  • Small Nucleolar RNA, C/D Box 96A 2 3 5
  • C/D Box SnoRNA U96a 3
  • U96A 3

External Ids for SNORD96A Gene

ORGUL Members for SNORD96A Gene

Previous GeneCards Identifiers for SNORD96A Gene

  • GC05M180604
  • GC05M180668
  • GC05M175395

Summaries for SNORD96A Gene

GeneCards Summary for SNORD96A Gene

SNORD96A (Small Nucleolar RNA, C/D Box 96A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD96A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD96A Gene

Genomics for SNORD96A Gene

GeneHancer (GH) Regulatory Elements for SNORD96A Gene

Promoters and enhancers for SNORD96A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J180859 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 28.1 +380.9 380867 2.4 FOXA2 PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZFP62 ENSG00000233937 CNOT6 TRIM52 MRNIP SNORD96A GFPT2 LINC00847 GC05P181084
GH05J181221 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 20 +18.6 18640 4.4 CLOCK ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PIR62653 PIR33457 TRIM41 TRK-CTT2-3 TRV-CAC1-5 MIR4638 ENSG00000233937 TRIM52 RACK1 CNOT6
GH05J181215 Enhancer 1.5 Ensembl ENCODE dbSUPER 29.1 +24.4 24357 3.3 CLOCK MLX FEZF1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 TRV-AAC1-4 ENSG00000233937 RACK1 TRIM52 ZFP62 CNOT6 TRIM52-AS1 SNORD96A MGAT1 TRIM7
GH05J181187 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 19.9 +51.7 51662 6.5 MLX FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 SSRP1 GLIS1 RCOR2 GC05M181242 GC05M181245 LOC105377769 PIR54518 TRP-TGG3-1 TRT-TGT6-1 TRV-AAC2-1 LINC01962 ENSG00000233937 TRIM52
GH05J181240 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12 -3.3 -3307 9 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 ZNF610 GLIS1 NBN ENSG00000233937 RACK1 CTC-338M12.4 GC05M181247 GC05M181248 GC05M181249 GC05M181250 SNORD95 TRIM52-AS1 TRIM52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD96A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD96A gene promoter:

Genomic Locations for SNORD96A Gene

Genomic Locations for SNORD96A Gene
79 bases
Minus strand

Genomic View for SNORD96A Gene

Genes around SNORD96A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD96A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD96A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD96A Gene

Proteins for SNORD96A Gene

Post-translational modifications for SNORD96A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD96A Gene

Domains & Families for SNORD96A Gene

Gene Families for SNORD96A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD96A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD96A Gene

Function for SNORD96A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD96A Gene

Localization for SNORD96A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD96A Gene

Pathways & Interactions for SNORD96A Gene

SuperPathways for SNORD96A Gene

No Data Available

Interacting Proteins for SNORD96A Gene

Gene Ontology (GO) - Biological Process for SNORD96A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD96A Gene

Drugs & Compounds for SNORD96A Gene

No Compound Related Data Available

Transcripts for SNORD96A Gene

mRNA/cDNA for SNORD96A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD96A Gene

No ASD Table

Relevant External Links for SNORD96A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD96A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD96A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD96A Gene:

genes like me logo Genes that share expression patterns with SNORD96A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD96A Gene

Orthologs for SNORD96A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD96A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD96 34
  • 99 (a)
(Bos Taurus)
Mammalia SNORD96 34
  • 95 (a)
(Canis familiaris)
Mammalia SNORD96 34
  • 90 (a)
(Mus musculus)
Mammalia Snord96a 34
  • 83 (a)
(Monodelphis domestica)
Mammalia SNORD96 34
  • 76 (a)
(Anolis carolinensis)
Reptilia SNORD96 34
  • 68 (a)
Species where no ortholog for SNORD96A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD96A Gene

Gene Tree for SNORD96A (if available)
Gene Tree for SNORD96A (if available)

Paralogs for SNORD96A Gene

No data available for Paralogs for SNORD96A Gene

Variants for SNORD96A Gene

Sequence variations from dbSNP and Humsavar for SNORD96A Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1001718850 -- 181,241,395(-) A/C downstream_transcript_variant
rs1002028942 -- 181,242,282(-) G/C upstream_transcript_variant
rs1002131846 -- 181,241,728(-) T/C downstream_transcript_variant
rs1002759209 -- 181,242,863(-) T/A upstream_transcript_variant
rs1003136540 -- 181,242,964(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD96A Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781
nsv830567 CNV loss 17160897

Additional Variant Information for SNORD96A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD96A Gene

Disorders for SNORD96A Gene

Additional Disease Information for SNORD96A

No disorders were found for SNORD96A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD96A Gene

Publications for SNORD96A Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD96A Gene

Sources for SNORD96A Gene

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