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Aliases for SNORD95 Gene

Subcategory (RNA class) for SNORD95 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD95 Gene

  • Small Nucleolar RNA, C/D Box 95 2 3 5
  • C/D Box SnoRNA U95 3
  • U95 3

External Ids for SNORD95 Gene

ORGUL Members for SNORD95 Gene

Previous GeneCards Identifiers for SNORD95 Gene

  • GC05M180605
  • GC05M180670
  • GC05M175397

Summaries for SNORD95 Gene

GeneCards Summary for SNORD95 Gene

SNORD95 (Small Nucleolar RNA, C/D Box 95) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD95 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD95 Gene

Genomics for SNORD95 Gene

GeneHancer (GH) Regulatory Elements for SNORD95 Gene

Promoters and enhancers for SNORD95 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J181240 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -1.8 -1820 9 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 ZNF610 GLIS1 NBN ENSG00000233937 RACK1 SNORD95 CTC-338M12.4 GC05M181250 GC05M181249 GC05M181248 GC05M181247 TRIM52-AS1 TRIM52
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD95 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD95 gene promoter:
  • STAT3
  • p53
  • TBP
  • STAT5B
  • Bach2
  • HNF-1
  • HNF-1A
  • GATA-2
  • HEN1

Genomic Locations for SNORD95 Gene

Genomic Locations for SNORD95 Gene
chr5:181,243,312-181,243,379
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand
chr5:180,670,312-180,670,379
(GRCh37/hg19)
Size:
68 bases
Orientation:
Minus strand

Genomic View for SNORD95 Gene

Genes around SNORD95 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD95 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD95 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD95 Gene

Proteins for SNORD95 Gene

Post-translational modifications for SNORD95 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD95 Gene

Domains & Families for SNORD95 Gene

Gene Families for SNORD95 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD95: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD95 Gene

Function for SNORD95 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD95 Gene

Localization for SNORD95 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD95 Gene

Pathways & Interactions for SNORD95 Gene

SuperPathways for SNORD95 Gene

No Data Available

Interacting Proteins for SNORD95 Gene

Gene Ontology (GO) - Biological Process for SNORD95 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD95 Gene

Drugs & Compounds for SNORD95 Gene

No Compound Related Data Available

Transcripts for SNORD95 Gene

mRNA/cDNA for SNORD95 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD95 Gene

No ASD Table

Relevant External Links for SNORD95 Gene

GeneLoc Exon Structure for
SNORD95
ECgene alternative splicing isoforms for
SNORD95

Expression for SNORD95 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD95 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD95 Gene:

SNORD95
genes like me logo Genes that share expression patterns with SNORD95: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD95 Gene

Orthologs for SNORD95 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD95 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD95 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD95 34
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm25296 34
  • 91 (a)
OneToMany
Snord95 34
  • 85 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD95 34
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD95 34 34 34
  • 79 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD95 34
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD95 34
  • 72 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD95 34
  • 69 (a)
OneToMany
Species where no ortholog for SNORD95 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD95 Gene

ENSEMBL:
Gene Tree for SNORD95 (if available)
TreeFam:
Gene Tree for SNORD95 (if available)

Paralogs for SNORD95 Gene

No data available for Paralogs for SNORD95 Gene

Variants for SNORD95 Gene

Sequence variations from dbSNP and Humsavar for SNORD95 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000515879 -- 181,245,022(-) C/A upstream_transcript_variant
rs1000755576 -- 181,244,778(-) G/A upstream_transcript_variant
rs1001146823 -- 181,244,576(-) C/G upstream_transcript_variant
rs1001803648 -- 181,243,972(-) T/C upstream_transcript_variant
rs1002759209 -- 181,242,863(-) T/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD95 Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781
nsv830567 CNV loss 17160897

Additional Variant Information for SNORD95 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD95

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD95 Gene

Disorders for SNORD95 Gene

Additional Disease Information for SNORD95

No disorders were found for SNORD95 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD95 Gene

Publications for SNORD95 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD95 Gene

Sources for SNORD95 Gene

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