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Aliases for SNORD94 Gene

Subcategory (RNA class) for SNORD94 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD94 Gene

  • Small Nucleolar RNA, C/D Box 94 2 3 5
  • U94 3

External Ids for SNORD94 Gene

ORGUL Members for SNORD94 Gene

Previous GeneCards Identifiers for SNORD94 Gene

  • GC02U900837
  • GC02P086217
  • GC02P086362

Summaries for SNORD94 Gene

GeneCards Summary for SNORD94 Gene

SNORD94 (Small Nucleolar RNA, C/D Box 94) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD94 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD94 Gene

Genomics for SNORD94 Gene

GeneHancer (GH) Regulatory Elements for SNORD94 Gene

Promoters and enhancers for SNORD94 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J085536 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 78.7 -596.1 -596110 6.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 GC02M085541 PIR39955 PIR40998 PARTICL MAT2A USP39 SNORD94 C2orf68 LOC100996506 KDM3A
GH02J086440 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 67.6 +306.2 306155 3.6 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 KDM3A GC02M086437 LOC102724642 SNORD94 C2orf68 ENSG00000231259 USP39 LOC100420889 LOC105374845 PTCD3
GH02J086193 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 44.8 +59.6 59578 3.9 ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 IMMT GC02P086196 MRPL35 ENSG00000273080 LOC102724642 SNORD94 ENSG00000231259 LOC100420889 KDM3A USP39
GH02J085611 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 43.9 -523.9 -523945 1.9 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ZNF143 C2orf68 SNORD94 ELMOD3 LOC100996506 POLR1A TCF7L1 LOC105374845 MAT2A USP39 TMEM150A
GH02J086104 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 37.8 -29.6 -29552 3.2 HDGF PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 POLR1A PTCD3 SNORD94 ENSG00000231259 LOC105374845 C2orf68 LOC100996506 USP39 ELMOD3 MRPL35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD94 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD94 gene promoter:
  • E2F
  • AREB6
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Nkx2-5
  • Gfi-1
  • POU3F2

Genomic Locations for SNORD94 Gene

Genomic Locations for SNORD94 Gene
chr2:86,135,870-86,136,006
(GRCh38/hg38)
Size:
137 bases
Orientation:
Plus strand
chr2:86,362,993-86,363,129
(GRCh37/hg19)
Size:
137 bases
Orientation:
Plus strand

Genomic View for SNORD94 Gene

Genes around SNORD94 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD94 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD94 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD94 Gene

Proteins for SNORD94 Gene

Post-translational modifications for SNORD94 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD94 Gene

Domains & Families for SNORD94 Gene

Gene Families for SNORD94 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD94: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD94 Gene

Function for SNORD94 Gene

Phenotypes From GWAS Catalog for SNORD94 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD94 Gene

Localization for SNORD94 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD94 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD94 Gene

Pathways & Interactions for SNORD94 Gene

SuperPathways for SNORD94 Gene

No Data Available

Interacting Proteins for SNORD94 Gene

Gene Ontology (GO) - Biological Process for SNORD94 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD94 Gene

Drugs & Compounds for SNORD94 Gene

No Compound Related Data Available

Transcripts for SNORD94 Gene

mRNA/cDNA for SNORD94 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for SNORD94 Gene

Small nucleolar RNA, C/D box 94:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD94 Gene

No ASD Table

Relevant External Links for SNORD94 Gene

GeneLoc Exon Structure for
SNORD94
ECgene alternative splicing isoforms for
SNORD94

Expression for SNORD94 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD94 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD94 Gene:

SNORD94

SOURCE GeneReport for Unigene cluster for SNORD94 Gene:

Hs.723087
genes like me logo Genes that share expression patterns with SNORD94: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD94 Gene

Orthologs for SNORD94 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD94 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD94 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD94 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22486 34
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD94 34
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD94 34
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD94 34 34 34 34
  • 83 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD94 34
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD94 34
  • 68 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD94 34
  • 64 (a)
OneToOne
Species where no ortholog for SNORD94 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD94 Gene

ENSEMBL:
Gene Tree for SNORD94 (if available)
TreeFam:
Gene Tree for SNORD94 (if available)

Paralogs for SNORD94 Gene

No data available for Paralogs for SNORD94 Gene

Variants for SNORD94 Gene

Sequence variations from dbSNP and Humsavar for SNORD94 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1003714898 -- 86,134,489(+) T/C upstream_transcript_variant
rs1004166658 -- 86,135,205(+) T/C upstream_transcript_variant
rs1007056558 -- 86,135,264(+) A/G upstream_transcript_variant
rs1010343824 -- 86,134,539(+) T/C upstream_transcript_variant
rs1010581064 -- 86,134,907(+) G/C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD94 Gene

Variant ID Type Subtype PubMed ID
dgv3885n100 CNV gain 25217958
dgv6946n54 CNV gain 21841781
dgv712e214 CNV gain 21293372
esv2751903 CNV gain 17911159
esv3591540 CNV gain 21293372
nsv458563 CNV gain 19166990

Additional Variant Information for SNORD94 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD94

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD94 Gene

Disorders for SNORD94 Gene

Additional Disease Information for SNORD94

No disorders were found for SNORD94 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD94 Gene

Publications for SNORD94 Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD94 Gene

Sources for SNORD94 Gene

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