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Aliases for SNORD93 Gene

Subcategory (RNA class) for SNORD93 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD93 Gene

  • Small Nucleolar RNA, C/D Box 93 2 3 5
  • HBII-336 3

External Ids for SNORD93 Gene

ORGUL Members for SNORD93 Gene

Previous GeneCards Identifiers for SNORD93 Gene

  • GC07U901574
  • GC07P022864
  • GC07P022780
  • GC07P022896
  • GC07P022857

Summaries for SNORD93 Gene

GeneCards Summary for SNORD93 Gene

SNORD93 (Small Nucleolar RNA, C/D Box 93) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD93 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD93 Gene

Genomics for SNORD93 Gene

GeneHancer (GH) Regulatory Elements for SNORD93 Gene

Promoters and enhancers for SNORD93 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J022852 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.3 259 8.9 PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B ZNF207 SNORD93 GC07P022859 TOMM7 SNHG26 TRA2A NUPL2 FAM126A ENSG00000179428 IL6 ENSG00000226329
GH07J022862 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +8.8 8847 5.9 RXRA EBF1 MEF2B RAD21 YY1 NR2F2 SP1 JUND POLR2A BCL11A SNHG26 TOMM7 FAM126A ENSG00000226329 SNORD93
GH07J022871 Enhancer 0.9 Ensembl ENCODE 0.4 +15.7 15690 0.8 PKNOX1 IRF3 EBF1 RFX5 GATA3 RFXANK ZNF143 ATF7 FOS CREM SNHG26 FAM126A ENSG00000226329 SNORD93
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD93 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD93 gene promoter:
  • CUTL1
  • CBF(2)
  • CBF-A
  • CBF-B
  • CP1A
  • NF-Y
  • NF-YA
  • NF-YB
  • TBP
  • HNF-4alpha1

Genomic Locations for SNORD93 Gene

Genomic Locations for SNORD93 Gene
chr7:22,856,613-22,856,686
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr7:22,896,232-22,896,305
(GRCh37/hg19)
Size:
74 bases
Orientation:
Plus strand

Genomic View for SNORD93 Gene

Genes around SNORD93 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD93 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD93 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD93 Gene

Proteins for SNORD93 Gene

Post-translational modifications for SNORD93 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD93 Gene

Domains & Families for SNORD93 Gene

Gene Families for SNORD93 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD93: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD93 Gene

Function for SNORD93 Gene

Phenotypes From GWAS Catalog for SNORD93 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD93 Gene

Localization for SNORD93 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD93 Gene

Pathways & Interactions for SNORD93 Gene

SuperPathways for SNORD93 Gene

No Data Available

Interacting Proteins for SNORD93 Gene

Gene Ontology (GO) - Biological Process for SNORD93 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD93 Gene

Drugs & Compounds for SNORD93 Gene

No Compound Related Data Available

Transcripts for SNORD93 Gene

mRNA/cDNA for SNORD93 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD93 Gene

No ASD Table

Relevant External Links for SNORD93 Gene

GeneLoc Exon Structure for
SNORD93
ECgene alternative splicing isoforms for
SNORD93

Expression for SNORD93 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD93 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD93 Gene:

SNORD93
genes like me logo Genes that share expression patterns with SNORD93: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD93 Gene

Orthologs for SNORD93 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD93 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD93 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord93 34
  • 90 (a)
OneToMany
Mir3096 34
  • 89 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD93 34
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD93 34
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD93 34
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD93 34 34 34 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD93 34
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD93 34
  • 62 (a)
OneToOne
Species where no ortholog for SNORD93 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD93 Gene

ENSEMBL:
Gene Tree for SNORD93 (if available)
TreeFam:
Gene Tree for SNORD93 (if available)

Paralogs for SNORD93 Gene

No data available for Paralogs for SNORD93 Gene

Variants for SNORD93 Gene

Sequence variations from dbSNP and Humsavar for SNORD93 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000804413 -- 22,855,733(+) T/G upstream_transcript_variant
rs1000856679 -- 22,855,471(+) T/G upstream_transcript_variant
rs1001358966 -- 22,854,786(+) C/G upstream_transcript_variant
rs1003424465 -- 22,856,195(+) C/G upstream_transcript_variant
rs1004457203 -- 22,857,162(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD93 Gene

Variant ID Type Subtype PubMed ID
esv2759518 CNV loss 17122850
nsv1026020 CNV loss 25217958
nsv1027363 CNV gain 25217958
nsv526131 CNV loss 19592680
nsv7393 OTHER inversion 18451855

Additional Variant Information for SNORD93 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD93

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD93 Gene

Disorders for SNORD93 Gene

Additional Disease Information for SNORD93

No disorders were found for SNORD93 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD93 Gene

Publications for SNORD93 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD93 Gene

Sources for SNORD93 Gene

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