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Aliases for SNORD89 Gene
Data sources for SNORD89 Gene:
Subcategory (RNA class) for SNORD89 Gene
snoRNA
Aliases for SNORD89 Gene
- Small Nucleolar RNA, C/D Box 89 (HGNC, NCBI Entrez Gene, Ensembl)
- HBII-289 (HGNC, NCBI Entrez Gene)
- SNORD89 (Ensembl, snOPY)
- SNODB1627 (snoDB)
- RF00578 (Rfam)
External Ids for SNORD89 Gene
- HGNC: 32750
- NCBI Entrez Gene: 692205
- Ensembl: ENSG00000212283
Previous GeneCards Identifiers for SNORD89 Gene
- GC02U900834
- GC02M101255
- GC02M101889
- GC02M095653
Summaries for SNORD89 Gene
GeneCards Summary for SNORD89 Gene
SNORD89 (Small Nucleolar RNA, C/D Box 89) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD89 Gene
-
Small nucleolar RNA SNORD89
Additional gene information for SNORD89 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD89 Gene
Genomics for SNORD89 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD89 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD89 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD89 gene promoter:
-
- AML1a
- FOXI1
- HFH-3
- HNF-3beta
- POU2F1
- POU2F1a
- RP58
- RREB-1
- USF-1
- USF1
Genomic Locations for SNORD89 Gene
Latest Assembly
- chr2:101,272,936-101,273,049
- (GRCh38/hg38)
- Size:
- 114 bases
- Orientation:
- Minus strand
Previous Assembly
- chr2:101,889,398-101,889,511
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 114 bases
- Orientation:
- Minus strand
- chr2:101,889,398-101,889,511
- (GRCh37/hg19 by Ensembl)
- Size:
- 114 bases
- Orientation:
- Minus strand
Genomic View for SNORD89 Gene
Genes around SNORD89 on UCSC Golden Path with GeneCards custom track
SNORD89 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q11.2 by HGNC
- 2q11.2 by Entrez Gene
- 2q11.2 by Ensembl
SNORD89 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD89 Gene
Proteins for SNORD89 Gene
Post-translational modifications for SNORD89 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD89 Gene
Domains & Families for SNORD89 Gene
Gene Families for SNORD89 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD89 Gene
Function for SNORD89 Gene
Phenotypes From GWAS Catalog for SNORD89 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD89 - Starting at $85 >
- * SNORD89 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for SNORD89
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD89 Gene
Localization for SNORD89 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD89 Gene
Pathways & Interactions for SNORD89 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD89 Gene
Transcripts for SNORD89 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD89 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000633321_9606 | snoRNA | 114 | 5 |
RefSeq: NR_003070, Ensembl: ENST00000390981 (view in UCSC) , Rfam: RF00578, snoDB: SNODB1627, snOPY: Homo_sapiens300430, |
| URS0001BC1050_9606 | snoRNA | 114 | 1 |
Rfam: RF00578, |
SNORD89 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORD89 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD89 - Starting at $85 >
- * SNORD89 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
-
OriGene CRISPR knockouts for SNORD89
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD89 Gene
- GeneLoc Exon Structure for
- SNORD89
Expression for SNORD89 Gene
mRNA differential expression in normal tissues according to GTEx for SNORD89 Gene
This gene is overexpressed in Whole Blood (x9.5).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD89
SOURCE GeneReport for Unigene cluster for SNORD89 Gene:
Hs.656503Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD89 Gene
Orthologs for SNORD89 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORD89 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Snord89 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORD89 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORD89 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORD89 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORD89 31 31 |
|
OneToMany | |
| Chicken (Gallus gallus) |
Aves | SNORD89 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORD89 31 |
|
OneToOne | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORD89 31 |
|
OneToOne |
- Species where no ortholog for SNORD89 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORD89 Gene
No data available for Paralogs for SNORD89 Gene
Variants for SNORD89 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD89 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD89
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD89 Gene
Disorders for SNORD89 Gene
Additional Disease Information for SNORD89
No disorders were found for SNORD89 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD89 Gene
Publications for SNORD89 Gene
- RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
- SNORD89 promotes stemness phenotype of ovarian cancer cells by regulating Notch1-c-Myc pathway. (PMID: 31395064) Zhu W … Wei M (Journal of translational medicine 2019) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORD89 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD89
- Origene Custom Protein Services for SNORD89
- Browse OriGene Inhibitory RNA Products For SNORD89
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for SNORD89
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD89
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD89
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD89
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD89
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD89
Sources for SNORD89 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB