SNORD88C Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 88C

GC19M050802
GIFtS:
15
See more...

Aliases for SNORD88C Gene

Data sources for SNORD88C Gene:

Subcategory (RNA class) for SNORD88C Gene

snoRNA

Aliases for SNORD88C Gene

External Ids for SNORD88C Gene

Previous GeneCards Identifiers for SNORD88C Gene

  • GC19U900586
  • GC19M056000
  • GC19M051305
  • GC19M047640

Summaries for SNORD88C Gene

GeneCards Summary for SNORD88C Gene

SNORD88C (Small Nucleolar RNA, C/D Box 88C) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD88C Gene

  • Small nucleolar RNA SNORD88

Additional gene information for SNORD88C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD88C Gene

Genomics for SNORD88C Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD88C Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD88C on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD88C gene promoter:
  • AP-4
  • Hlf
  • MZF-1
  • NF-1
  • NF-kappaB
  • NF-kappaB1
  • Olf-1
  • PPAR-gamma1
  • PPAR-gamma2
  • SRY

Genomic Locations for SNORD88C Gene

Latest Assembly
chr19:50,802,325-50,802,421
(GRCh38/hg38)
Size:
97 bases
Orientation:
Minus strand

Previous Assembly
chr19:51,305,582-51,305,678
(GRCh37/hg19 by Entrez Gene)
Size:
97 bases
Orientation:
Minus strand

chr19:51,305,585-51,305,675
(GRCh37/hg19 by Ensembl)
Size:
91 bases
Orientation:
Minus strand

Genomic View for SNORD88C Gene

Genes around SNORD88C on UCSC Golden Path with GeneCards custom track
SNORD88C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD88C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD88C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD88C Gene

Proteins for SNORD88C Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SNORD88C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD88C Gene

Domains & Families for SNORD88C Gene

Gene Families for SNORD88C Gene

HGNC:
genes like me logo Genes that share domains with SNORD88C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD88C Gene

Function for SNORD88C Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNORD88C Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD88C Gene

Localization for SNORD88C Gene

Gene Ontology (GO) - Cellular Components for SNORD88C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD88C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD88C Gene

Pathways & Interactions for SNORD88C Gene

PathCards logo

SuperPathways for SNORD88C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD88C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD88C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD88C Gene

Drugs & Compounds for SNORD88C Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for SNORD88C Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD88C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006611EB_9606 snoRNA 91 4

Ensembl: ENST00000408061 (view in UCSC) ,

Rfam: RF00604,

snoDB: SNODB1658,

snOPY: Homo_sapiens300571,

URS000075A57C_9606 snoRNA 97 2

RefSeq: NR_003069,

snoDB: SNODB1301,

URS0001BC3A91_9606 snoRNA 91 1

Rfam: RF00604,

SNORD88C in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD88C Gene

No ASD Table

Relevant External Links for SNORD88C Gene

GeneLoc Exon Structure for
SNORD88C

No data available for mRNA/cDNA for SNORD88C Gene

Expression for SNORD88C Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD88C Gene

mRNA expression in normal human tissues for SNORD88C Gene
mRNA expression by GTEx for SNORD88C Gene

mRNA differential expression in normal tissues according to GTEx for SNORD88C Gene

This gene is overexpressed in Prostate (x11.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD88C

genes like me logo Genes that share expression patterns with SNORD88C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD88C Gene

Orthologs for SNORD88C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD88C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD88 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD88 31
  • 91 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD88 31
  • 87 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD88 31
  • 84 (a)
 OneToMany
Mouse
(Mus musculus)
 Mammalia Gm26247 31
  • 84 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SNORD88 31
  • 76 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves SNORD88 31
  • 54 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORD88 31
  • 70 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD88 31
  • 59 (a)
 OneToMany
Species where no ortholog for SNORD88C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD88C Gene

ENSEMBL:
Gene Tree for SNORD88C (if available)
TreeFam:
Gene Tree for SNORD88C (if available)

Paralogs for SNORD88C Gene

No data available for Paralogs for SNORD88C Gene

Variants for SNORD88C Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD88C Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD88C Gene

Variant ID Type Subtype PubMed ID
dgv203n21 CNV loss 19592680
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SNORD88C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD88C

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD88C Gene

Disorders for SNORD88C Gene

Additional Disease Information for SNORD88C

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD88C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD88C Gene

Publications for SNORD88C Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD88C gene in Mastermind

Products for SNORD88C Gene

Sources for SNORD88C Gene