SNORD88A Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 88A

GC19M050809
GIFtS:
14
See more...

Aliases for SNORD88A Gene

Data sources for SNORD88A Gene:

Subcategory (RNA class) for SNORD88A Gene

snoRNA

Aliases for SNORD88A Gene

External Ids for SNORD88A Gene

Previous GeneCards Identifiers for SNORD88A Gene

  • GC19U900584
  • GC19M055999
  • GC19M051303
  • GC19M047637
  • GC19M051308
  • GC19M051313
  • GC19M051324
  • GC19M050800
  • GC19M050801
  • GC19M050829
  • GC19M050842
  • GC19M050818
  • GC19M050811
  • GC19M050803
  • GC19M050806
  • GC19M050807

Summaries for SNORD88A Gene

GeneCards Summary for SNORD88A Gene

SNORD88A (Small Nucleolar RNA, C/D Box 88A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD88A Gene

  • Small nucleolar RNA SNORD88

Additional gene information for SNORD88A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD88A Gene

Genomics for SNORD88A Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD88A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD88A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD88A gene promoter:
  • AP-4
  • E47
  • Hlf
  • LCR-F1
  • Meis-1b
  • Olf-1
  • PPAR-gamma1
  • PPAR-gamma2
  • SRY

Genomic Locations for SNORD88A Gene

Latest Assembly
chr19:50,799,439-50,799,535
(GRCh38/hg38)
Size:
97 bases
Orientation:
Minus strand

Previous Assembly
chr19:51,302,696-51,302,792
(GRCh37/hg19 by Entrez Gene)
Size:
97 bases
Orientation:
Minus strand

chr19:51,302,699-51,302,789
(GRCh37/hg19 by Ensembl)
Size:
91 bases
Orientation:
Minus strand

Genomic View for SNORD88A Gene

Genes around SNORD88A on UCSC Golden Path with GeneCards custom track
SNORD88A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD88A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD88A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD88A Gene

Proteins for SNORD88A Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SNORD88A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD88A Gene

Domains & Families for SNORD88A Gene

Gene Families for SNORD88A Gene

HGNC:
genes like me logo Genes that share domains with SNORD88A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD88A Gene

Function for SNORD88A Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNORD88A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD88A Gene

Localization for SNORD88A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD88A gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD88A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD88A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD88A Gene

Pathways & Interactions for SNORD88A Gene

PathCards logo

SuperPathways for SNORD88A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD88A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD88A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD88A Gene

Drugs & Compounds for SNORD88A Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for SNORD88A Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD88A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DD61_9606 snoRNA 97 3

RefSeq: NR_003067,

snoDB: SNODB1787,

snOPY: Homo_sapiens300570,

URS00006DA236_9606 snoRNA 91 3

Ensembl: ENST00000408314 (view in UCSC) ,

Rfam: RF00604,

snoDB: SNODB969,

URS0001BC3BA1_9606 snoRNA 91 1

Rfam: RF00604,

SNORD88A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD88A Gene

No ASD Table

Relevant External Links for SNORD88A Gene

GeneLoc Exon Structure for
SNORD88A

No data available for mRNA/cDNA for SNORD88A Gene

Expression for SNORD88A Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD88A Gene

mRNA expression in normal human tissues for SNORD88A Gene
mRNA expression by GTEx for SNORD88A Gene
genes like me logo Genes that share expression patterns with SNORD88A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD88A Gene

Orthologs for SNORD88A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD88A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD88 31
  • 100 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord88a 31
  • 87 (a)
 OneToMany
Snord88c 31
  • 87 (a)
 OneToMany
Gm25809 31
  • 81 (a)
 OneToMany
Dog
(Canis familiaris)
 Mammalia SNORD88 31
  • 87 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD88 31
  • 80 (a)
 OneToMany
Cow
(Bos Taurus)
 Mammalia SNORD88 31 31
  • 79 (a)
 OneToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD88 31
  • 69 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves SNORD88 31
  • 50 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORD88 31
  • 68 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD88 31
  • 57 (a)
 OneToMany
Species where no ortholog for SNORD88A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD88A Gene

ENSEMBL:
Gene Tree for SNORD88A (if available)
TreeFam:
Gene Tree for SNORD88A (if available)

Paralogs for SNORD88A Gene

No data available for Paralogs for SNORD88A Gene

Variants for SNORD88A Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD88A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD88A Gene

Variant ID Type Subtype PubMed ID
dgv203n21 CNV loss 19592680
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SNORD88A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD88A

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD88A Gene

Disorders for SNORD88A Gene

Additional Disease Information for SNORD88A

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD88A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD88A Gene

Publications for SNORD88A Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD88A gene in Mastermind

Products for SNORD88A Gene

Sources for SNORD88A Gene