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Aliases for SNORD88A Gene

Subcategory (RNA class) for SNORD88A Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD88A Gene

  • Small Nucleolar RNA, C/D Box 88A 2 3 5
  • HBII-180A 3

External Ids for SNORD88A Gene

ORGUL Members for SNORD88A Gene

Previous GeneCards Identifiers for SNORD88A Gene

  • GC19U900584
  • GC19M055999
  • GC19M051303
  • GC19M047637
  • GC19M051308
  • GC19M051313
  • GC19M051324
  • GC19M050800
  • GC19M050801
  • GC19M050829
  • GC19M050803
  • GC19M050806
  • GC19M050807
  • GC19M050809
  • GC19M050811
  • GC19M050818

Summaries for SNORD88A Gene

GeneCards Summary for SNORD88A Gene

SNORD88A (Small Nucleolar RNA, C/D Box 88A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD88A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD88A Gene

Genomics for SNORD88A Gene

GeneHancer (GH) Regulatory Elements for SNORD88A Gene

Promoters and enhancers for SNORD88A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J050720 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.9 +76.0 75990 6.1 SP1 ZFX CTCF CC2D1A MLLT1 GTF2F1 ZNF687 ZSCAN21 MYC TRIM24 CLEC11A NUP62 ZNF175 CTU1 C19orf48 GPR32 ENSG00000268047 AKT1S1 SNORD88A SNORD88B
GH19J050835 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -36.7 -36666 1.6 ZFX MLLT1 ZNF121 POLR2A GTF2F1 ZNF687 NCOA6 SP1 SP5 KLF14 KLK15 ZNF175 NUP62 PTOV1-AS2 LINC01869 C19orf48 SNORD88C KLK2 SNORD88A SNORD88B
GH19J050727 Promoter/Enhancer 1.4 Ensembl ENCODE 10.9 +71.1 71053 1.3 SP1 SIX5 ZNF639 EGR1 GMEB1 IKZF1 ZBTB8A ATF1 PKNOX1 HDAC1 GPR32 SNORD88A SNORD88B SNORD88C C19orf48 LINC01869 KLK1 KLK15 FUZ CLEC11A
GH19J050537 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.1 +261.6 261634 0.6 CC2D1A CTCF ZNF687 ZSCAN21 SP7 ZNF639 RAD21 CREB1 GMEB1 ARID2 ASPDH JOSD2 LRRC4B GPR32 SNORD88A SNORD88B SNORD88C NAPSA NR1H2 LINC01869
GH19J050837 Promoter/Enhancer 1.1 EPDnew dbSUPER 11.1 -37.9 -37879 0.1 MAFK ZBTB7A ZNF629 PATZ1 ATF2 BCL11A ZNF768 ZNF366 KLF17 KDM1A KLK15 LINC01869 C19orf48 SNORD88C KLK2 SNORD88A SNORD88B ENSG00000267968 LOC105372441 KLK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD88A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD88A gene promoter:
  • AP-4
  • E47
  • Hlf
  • LCR-F1
  • Meis-1b
  • Olf-1
  • PPAR-gamma1
  • PPAR-gamma2
  • SRY

Genomic Locations for SNORD88A Gene

Genomic Locations for SNORD88A Gene
chr19:50,799,439-50,799,535
(GRCh38/hg38)
Size:
97 bases
Orientation:
Minus strand
chr19:51,302,696-51,302,792
(GRCh37/hg19)
Size:
97 bases
Orientation:
Minus strand

Genomic View for SNORD88A Gene

Genes around SNORD88A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD88A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD88A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD88A Gene

Proteins for SNORD88A Gene

Post-translational modifications for SNORD88A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD88A Gene

Domains & Families for SNORD88A Gene

Gene Families for SNORD88A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD88A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD88A Gene

Function for SNORD88A Gene

Phenotypes From GWAS Catalog for SNORD88A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD88A Gene

Localization for SNORD88A Gene

Gene Ontology (GO) - Cellular Components for SNORD88A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD88A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD88A Gene

Pathways & Interactions for SNORD88A Gene

PathCards logo

SuperPathways for SNORD88A Gene

No Data Available

Interacting Proteins for SNORD88A Gene

Gene Ontology (GO) - Biological Process for SNORD88A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD88A: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD88A Gene

Drugs & Compounds for SNORD88A Gene

No Compound Related Data Available

Transcripts for SNORD88A Gene

mRNA/cDNA for SNORD88A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD88A Gene

No ASD Table

Relevant External Links for SNORD88A Gene

GeneLoc Exon Structure for
SNORD88A
ECgene alternative splicing isoforms for
SNORD88A

Expression for SNORD88A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD88A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD88A Gene:

SNORD88A
genes like me logo Genes that share expression patterns with SNORD88A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD88A Gene

Orthologs for SNORD88A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD88A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD88 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD88 35
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord88a 35
  • 87 (a)
OneToMany
Snord88c 35
  • 87 (a)
OneToMany
Gm25809 35
  • 81 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD88 35 35
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD88 35
  • 80 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD88 35
  • 69 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD88 35
  • 50 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD88 35
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD88 35
  • 57 (a)
OneToMany
Species where no ortholog for SNORD88A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD88A Gene

ENSEMBL:
Gene Tree for SNORD88A (if available)
TreeFam:
Gene Tree for SNORD88A (if available)

Paralogs for SNORD88A Gene

No data available for Paralogs for SNORD88A Gene

Variants for SNORD88A Gene

Sequence variations from dbSNP and Humsavar for SNORD88A Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000507527 -- 50,800,465(-) G/A upstream_transcript_variant
rs1000823791 -- 50,800,676(-) A/C upstream_transcript_variant
rs1001834226 -- 50,801,528(-) T/A upstream_transcript_variant
rs1004156871 -- 50,799,342(-) TC/ downstream_transcript_variant
rs1006317308 -- 50,799,736(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD88A Gene

Variant ID Type Subtype PubMed ID
dgv203n21 CNV loss 19592680
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SNORD88A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD88A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD88A Gene

Disorders for SNORD88A Gene

Additional Disease Information for SNORD88A

No disorders were found for SNORD88A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD88A Gene

Publications for SNORD88A Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD88A Gene

Sources for SNORD88A Gene

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