Aliases for SNORD88A Gene
Subcategory (RNA class) for SNORD88A Gene
snoRNA
Quality Score for this RNA gene is
13
External Ids for SNORD88A Gene
- HGNC: 32747
- Entrez Gene: 692202
- Ensembl: ENSG00000221241
Previous GeneCards Identifiers for SNORD88A Gene
- GC19U900584
- GC19M055999
- GC19M051303
- GC19M047637
- GC19M051308
- GC19M051313
- GC19M051324
- GC19M050800
- GC19M050801
- GC19M050829
- GC19M050803
- GC19M050806
- GC19M050807
- GC19M050809
- GC19M050811
- GC19M050818
Summaries for SNORD88A Gene
GeneCards Summary for SNORD88A Gene
SNORD88A (Small Nucleolar RNA, C/D Box 88A) is an RNA Gene, and is affiliated with the snoRNA class.
Additional gene information for SNORD88A Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD88A Gene
Genomics for SNORD88A Gene
GeneHancer (GH) Regulatory Elements for SNORD88A Gene
Promoters and enhancers for SNORD88A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD88A on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORD88A gene promoter:
-
- AP-4
- E47
- Hlf
- LCR-F1
- Meis-1b
- Olf-1
- PPAR-gamma1
- PPAR-gamma2
- SRY
Genomic Locations for SNORD88A Gene
Genomic Locations for SNORD88A Gene
- chr19:50,799,439-50,799,535
- (GRCh38/hg38)
- Size:
- 97 bases
- Orientation:
- Minus strand
- chr19:51,302,696-51,302,792
- (GRCh37/hg19)
- Size:
- 97 bases
- Orientation:
- Minus strand
Genomic View for SNORD88A Gene
Genes around SNORD88A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by HGNC
- 19q13.33 by Entrez Gene
- 19q13.33 by Ensembl
SNORD88A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD88A Gene
Proteins for SNORD88A Gene
Post-translational modifications for SNORD88A Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD88A
- Origene Custom Protein Services for SNORD88A
No data available for DME Specific Peptides for SNORD88A Gene
Domains & Families for SNORD88A Gene
Gene Families for SNORD88A Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD88A Gene
Function for SNORD88A Gene
Phenotypes From GWAS Catalog for SNORD88A Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD88A
-
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD88A - Now 50% OFF >
- * SNORD88A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD88A CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for SNORD88A
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORD88A - Now 50% OFF >
- * SNORD88A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD88A tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD88A Gene
Localization for SNORD88A Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD88A Gene
Pathways & Interactions for SNORD88A Gene
Interacting Proteins for SNORD88A Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006396 | RNA processing | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for SNORD88A Gene
Transcripts for SNORD88A Gene
mRNA/cDNA for SNORD88A Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000408314 91 bps (ENST00000408314.1)
- (2) RNA Central transcripts :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD88A - Now 50% OFF >
- * SNORD88A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD88A CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for SNORD88A
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for SNORD88A - Now 50% OFF >
- * SNORD88A as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD88A tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for SNORD88A Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORD88A Gene:
SNORD88APrimer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD88A Gene
Orthologs for SNORD88A Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | SNORD88 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | SNORD88 35 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Snord88a 35 |
|
OneToMany | |
| Snord88c 35 |
|
OneToMany | |||
| Gm25809 35 |
|
OneToMany | |||
| cow (Bos Taurus) |
Mammalia | SNORD88 35 35 |
|
OneToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | SNORD88 35 |
|
OneToMany | |
| oppossum (Monodelphis domestica) |
Mammalia | SNORD88 35 |
|
ManyToMany | |
| chicken (Gallus gallus) |
Aves | SNORD88 35 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | SNORD88 35 |
|
OneToMany | |
| zebrafish (Danio rerio) |
Actinopterygii | SNORD88 35 |
|
OneToMany |
- Species where no ortholog for SNORD88A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for SNORD88A Gene
No data available for Paralogs for SNORD88A Gene
Variants for SNORD88A Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000507527 | -- | 50,800,465(-) | G/A | upstream_transcript_variant | |
| rs1000823791 | -- | 50,800,676(-) | A/C | upstream_transcript_variant | |
| rs1001834226 | -- | 50,801,528(-) | T/A | upstream_transcript_variant | |
| rs1004156871 | -- | 50,799,342(-) | TC/ | downstream_transcript_variant | |
| rs1006317308 | -- | 50,799,736(-) | C/T | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv203n21 | CNV | loss | 19592680 |
| nsv1140251 | OTHER | inversion | 24896259 |
Additional Variant Information for SNORD88A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD88A
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD88A Gene
Disorders for SNORD88A Gene
Additional Disease Information for SNORD88A
No disorders were found for SNORD88A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD88A Gene
Publications for SNORD88A Gene
- RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
ExternalLinks
Products for SNORD88A Gene
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- Custom Antibody Services
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- Custom Assay Services
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- Browse Sino Biological Recombinant Proteins
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD88A
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD88A
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Sources for SNORD88A Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind