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Aliases for SNORD86 Gene

Subcategory (RNA class) for SNORD86 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD86 Gene

  • Small Nucleolar RNA, C/D Box 86 2 3 5
  • U86 3

External Ids for SNORD86 Gene

ORGUL Members for SNORD86 Gene

Previous GeneCards Identifiers for SNORD86 Gene

  • GC20U900213
  • GC20P002613
  • GC20P002632
  • GC20P002640
  • GC20P002649
  • GC20P002663
  • GC20P002675
  • GC20P002687
  • GC20P002696
  • GC20P002706
  • GC20P002722
  • GC20P002734
  • GC20P002753
  • GC20P002781
  • GC20P002789
  • GC20P002824
  • GC20P002833
  • GC20P002849
  • GC20P002862
  • GC20P002874

Summaries for SNORD86 Gene

GeneCards Summary for SNORD86 Gene

SNORD86 (Small Nucleolar RNA, C/D Box 86) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD86 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD86 Gene

Genomics for SNORD86 Gene

GeneHancer (GH) Regulatory Elements for SNORD86 Gene

Promoters and enhancers for SNORD86 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J002656 Promoter/Enhancer 1 EPDnew ENCODE 650.7 -0.1 -107 0.2 PAF1 HIC1 POLR2A ZNF837 ZKSCAN1 GC20P002890 GC20P002891 GC20P002892 GC20P002893 GC20P002894 GC20P002895 GC20P002896 GC20P002897 GC20P002898 GC20P002900
GH20J002655 Promoter/Enhancer 0.9 EPDnew ENCODE 650.7 -0.7 -691 0.2 SSRP1 POLR2A GC20P002890 GC20P002891 GC20P002892 GC20P002893 GC20P002894 GC20P002895 GC20P002896 GC20P002897 GC20P002898 GC20P002900
GH20J002751 Promoter/Enhancer 1.2 Ensembl ENCODE 10.4 +96.0 96005 0.6 CTCF ZNF792 RB1 DMAP1 GTF3C2 ZNF335 ZFHX2 VEZF1 EZH2 KLF11 VPS16 SNRPB ZNF343 PTPRA PCED1A C20orf141 ENSG00000241690 TMEM239 EBF4 NOP56
GH20J002750 Enhancer 0.8 ENCODE 10.4 +94.8 94816 0.8 SIN3A THRB ZNF366 CREM NFKBIZ KLF11 SP5 CEBPB ZBTB25 KAT8 VPS16 PTPRA PCED1A C20orf141 ENSG00000241690 TMEM239 EBF4 SNORD56 SNORD57 SNORD86
GH20J002752 Enhancer 0.8 ENCODE 10.4 +96.8 96843 0.2 KLF17 SIN3A KLF14 ZNF2 ZNF48 RAD21 YY1 ZEB1 ZNF335 GLIS2 VPS16 PTPRA PCED1A C20orf141 ENSG00000241690 TMEM239 EBF4 SNORD110 SNORD56 SNORD57
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD86 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD86 gene promoter:

Genomic Locations for SNORD86 Gene

Genomic Locations for SNORD86 Gene
chr20:2,656,097-2,656,182
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand
chr20:2,636,743-2,636,828
(GRCh37/hg19)

Genomic View for SNORD86 Gene

Genes around SNORD86 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD86 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD86 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD86 Gene

Proteins for SNORD86 Gene

Post-translational modifications for SNORD86 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD86 Gene

Domains & Families for SNORD86 Gene

Gene Families for SNORD86 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD86: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD86 Gene

Function for SNORD86 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD86 Gene

Localization for SNORD86 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD86 Gene

Pathways & Interactions for SNORD86 Gene

SuperPathways for SNORD86 Gene

No Data Available

Interacting Proteins for SNORD86 Gene

Gene Ontology (GO) - Biological Process for SNORD86 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD86 Gene

Drugs & Compounds for SNORD86 Gene

No Compound Related Data Available

Transcripts for SNORD86 Gene

mRNA/cDNA for SNORD86 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD86 Gene

No ASD Table

Relevant External Links for SNORD86 Gene

GeneLoc Exon Structure for
SNORD86
ECgene alternative splicing isoforms for
SNORD86

Expression for SNORD86 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD86 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD86 Gene:

SNORD86
genes like me logo Genes that share expression patterns with SNORD86: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD86 Gene

Orthologs for SNORD86 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD86 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD86 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD86 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD86 34
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23187 34
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD86 34
  • 67 (a)
OneToOne
Species where no ortholog for SNORD86 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD86 Gene

ENSEMBL:
Gene Tree for SNORD86 (if available)
TreeFam:
Gene Tree for SNORD86 (if available)

Paralogs for SNORD86 Gene

No data available for Paralogs for SNORD86 Gene

Variants for SNORD86 Gene

Sequence variations from dbSNP and Humsavar for SNORD86 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs2273137 likely-benign, not specified 2,654,566(+) A/G upstream_transcript_variant
rs8958 likely-benign, not specified 2,656,425(+) T/C downstream_transcript_variant
rs1003826440 -- 2,656,443(+) T/C downstream_transcript_variant
rs1006362841 -- 2,654,929(+) C/T upstream_transcript_variant
rs1011151170 -- 2,654,545(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD86 Gene

Variant ID Type Subtype PubMed ID
esv3644998 CNV gain 21293372
nsv1057464 CNV gain 25217958
nsv470535 CNV gain 18288195

Additional Variant Information for SNORD86 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD86

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD86 Gene

Disorders for SNORD86 Gene

Additional Disease Information for SNORD86

No disorders were found for SNORD86 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD86 Gene

Publications for SNORD86 Gene

  1. U86, a novel snoRNA with an unprecedented gene organization in yeast. (PMID: 11594746) Filippini D … Caffarelli E (Biochemical and biophysical research communications 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD86 Gene

Sources for SNORD86 Gene

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