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Aliases for SNORD83A Gene

Subcategory (RNA class) for SNORD83A Gene


Quality Score for this RNA gene is


Aliases for SNORD83A Gene

  • Small Nucleolar RNA, C/D Box 83A 2 3 5
  • RNA, U83A Small Nucleolar 2 3
  • U83a Small Nucleolar RNA 3
  • U83a SnoRNA 3
  • RNU83A 3
  • U83A 3

External Ids for SNORD83A Gene

ORGUL Members for SNORD83A Gene

Previous HGNC Symbols for SNORD83A Gene

  • RNU83A

Previous GeneCards Identifiers for SNORD83A Gene

  • GC22M038043
  • GC22M038044
  • GC22M039711
  • GC22M022677
  • GC22M039335
  • GC22M039837
  • GC22M039849
  • GC22M039944
  • GC22M040633
  • GC22M041080
  • GC22M041478
  • GC22M041886

Summaries for SNORD83A Gene

Entrez Gene Summary for SNORD83A Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like SNORD83A, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like SNORD83A, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD83A Gene

SNORD83A (Small Nucleolar RNA, C/D Box 83A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD83A Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD83A Gene

Genomics for SNORD83A Gene

GeneHancer (GH) Regulatory Elements for SNORD83A Gene

Promoters and enhancers for SNORD83A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J039316 Enhancer 0.5 ENCODE 650.7 +0.4 366 0.2 GLIS2 POLR2A PATZ1 RBM22 GC22M042461 GC22M042560 GC22M042591 GC22M042758 GC22M042846 SNORD139 SNORD83A SNORD83B PIR59759 GC22M042972
GH22J039317 Enhancer 0.5 ENCODE 650.7 +0.8 786 0.2 CTCF GLIS2 POLR2A PATZ1 RBM22 GC22M042461 GC22M042560 GC22M042972 SNORD83A PIR59759 SNORD83B GC22M042846 GC22M042758 RPL3
GH22J039313 Enhancer 0.5 ENCODE 650.7 +1.4 1366 0.2 GLIS2 POLR2A PATZ1 RBM22 SUPT5H GC22M042560 GC22M042972 SNORD83A SNORD83B PIR59759 GC22M042846 GC22M042758 GC22M042461 RPL3
GH22J039318 Enhancer 0.5 ENCODE 650.7 +1.8 1776 0.2 GLIS2 RXRA POLR2A PATZ1 RBM22 ZNF24 SUPT5H GC22M042560 GC22M042972 SNORD83A SNORD83B PIR59759 GC22M042846 GC22M042758 GC22M042461 RPL3 GC22P039299
GH22J039314 Enhancer 0.4 ENCODE 650.7 +1.0 1046 0.2 CTCF POLR2A GC22M042758 GC22M042846 GC22M042972 SNORD83A SNORD83B PIR59759 GC22M042560 GC22M042461 SYNGR1 PDGFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD83A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD83A gene promoter:
  • ATF6
  • CUTL1
  • AML1a
  • Bach2
  • STAT1beta
  • STAT1alpha
  • STAT1
  • ER-alpha
  • STAT2

Genomic Locations for SNORD83A Gene

Genomic Locations for SNORD83A Gene
95 bases
Minus strand
95 bases
Minus strand

Genomic View for SNORD83A Gene

Genes around SNORD83A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD83A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD83A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD83A Gene

Proteins for SNORD83A Gene

Post-translational modifications for SNORD83A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD83A Gene

Domains & Families for SNORD83A Gene

Gene Families for SNORD83A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD83A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD83A Gene

Function for SNORD83A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD83A Gene

Localization for SNORD83A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD83A Gene

Pathways & Interactions for SNORD83A Gene

SuperPathways for SNORD83A Gene

No Data Available

Interacting Proteins for SNORD83A Gene

Gene Ontology (GO) - Biological Process for SNORD83A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD83A Gene

Drugs & Compounds for SNORD83A Gene

No Compound Related Data Available

Transcripts for SNORD83A Gene

mRNA/cDNA for SNORD83A Gene

(98) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD83A Gene

No ASD Table

Relevant External Links for SNORD83A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD83A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD83A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD83A Gene:

genes like me logo Genes that share expression patterns with SNORD83A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD83A Gene

Orthologs for SNORD83A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD83A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoU83B 34
  • 100 (a)
(Bos Taurus)
Mammalia snoU83B 34
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia snoU83B 34 34
  • 76 (a)
(Monodelphis domestica)
Mammalia snoU83B 34
  • 74 (a)
(Canis familiaris)
Mammalia snoU83B 34
  • 65 (a)
(Mus musculus)
Mammalia Gm22077 34
  • 61 (a)
(Gallus gallus)
Aves snoU83B 34
  • 71 (a)
(Anolis carolinensis)
Reptilia snoU83B 34
  • 68 (a)
(Danio rerio)
Actinopterygii snoU83B 34
  • 57 (a)
Species where no ortholog for SNORD83A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD83A Gene

Gene Tree for SNORD83A (if available)
Gene Tree for SNORD83A (if available)

Paralogs for SNORD83A Gene

No data available for Paralogs for SNORD83A Gene

Variants for SNORD83A Gene

Sequence variations from dbSNP and Humsavar for SNORD83A Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000192525 -- 39,316,190(-) G/A upstream_transcript_variant
rs1000428722 -- 39,316,470(-) G/A upstream_transcript_variant
rs1000933539 -- 39,317,147(-) G/A upstream_transcript_variant
rs1002052109 -- 39,316,707(-) T/C upstream_transcript_variant
rs1005326180 -- 39,315,627(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD83A Gene

Variant ID Type Subtype PubMed ID
nsv589033 CNV loss 21841781
nsv834198 CNV loss 17160897

Additional Variant Information for SNORD83A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD83A Gene

Disorders for SNORD83A Gene

Additional Disease Information for SNORD83A

No disorders were found for SNORD83A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD83A Gene

Publications for SNORD83A Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD83A Gene

Sources for SNORD83A Gene

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