The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008] See more...

Aliases for SNORD82 Gene

Subcategory (RNA class) for SNORD82 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD82 Gene

  • Small Nucleolar RNA, C/D Box 82 2 3 5
  • SNORD82 2 5 170
  • U82 2 3
  • Z25 2 3
  • RNA, U82 Small Nucleolar 3
  • RNA, U82 Small Nuclear 2
  • SNODB1622 177
  • SNODB209 177
  • RF00158 168
  • RNU82 3

External Ids for SNORD82 Gene

Previous HGNC Symbols for SNORD82 Gene

  • RNU82

Previous GeneCards Identifiers for SNORD82 Gene

  • GC02U900827
  • GC02M232034
  • GC02M232325
  • GC02M224166

Summaries for SNORD82 Gene

Entrez Gene Summary for SNORD82 Gene

  • The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD82 Gene

SNORD82 (Small Nucleolar RNA, C/D Box 82) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD82 include Dry Beriberi and Desmoid Disease, Hereditary.

Rfam classification for SNORD82 Gene

  • Small nucleolar RNA SNORD82

Additional gene information for SNORD82 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD82 Gene

Genomics for SNORD82 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD82 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J231461 Enhancer 0.5 ENCODE 600.7 -1.5 -1483 0.1 HNRNPUL1 PKNOX1 ZNF207 POLR2A RBM22 HDGF ZNF513 AJ011568 SNORD82 piR-30652 piR-50192 DIS3L2 RPL28P2 ENSG00000235419 lnc-NMUR1-2 NCL B3GNT7
GH02J231463 Enhancer 0.4 ENCODE 600.7 -0.4 -423 0.2 CREB1 RBM22 POLR2A ZNF513 AJ011568 SNORD82 piR-30652 piR-50192 lnc-NMUR1-2 NCL B3GNT7
GH02J231460 Enhancer 0.4 ENCODE 600.7 -0.1 -63 0.2 POLR2A RBFOX2 CREB1 ZNF513 AJ011568 SNORD82 piR-30652 piR-50192 NCL B3GNT7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD82 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD82 gene promoter:
  • AML1a
  • TBP

Genomic Locations for SNORD82 Gene

Genomic Locations for SNORD82 Gene
chr2:231,460,368-231,460,442
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr2:232,325,079-232,325,153
(GRCh37/hg19)
Size:
75 bases
Orientation:
Minus strand

Genomic View for SNORD82 Gene

Genes around SNORD82 on UCSC Golden Path with GeneCards custom track
SNORD82 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD82 Gene

Proteins for SNORD82 Gene

Post-translational modifications for SNORD82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD82 Gene

Domains & Families for SNORD82 Gene

Gene Families for SNORD82 Gene

genes like me logo Genes that share domains with SNORD82: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD82 Gene

Function for SNORD82 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD82 Gene

Localization for SNORD82 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD82 gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD82 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD82: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD82 Gene

Pathways & Interactions for SNORD82 Gene

PathCards logo

SuperPathways for SNORD82 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD82 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD82: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD82 Gene

Drugs & Compounds for SNORD82 Gene

No Compound Related Data Available

Transcripts for SNORD82 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD82 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005160A3_9606 snoRNA 75 4

HGNC: 10240,

RefSeq: NR_004398,

snoDB: SNODB209,

ENA: AJ010666.1:1..75:ncRNA,

URS0000626A32_9606 snoRNA 70 3

Ensembl: ENST00000365530 (view in UCSC) ,

Rfam: RF00158,

snoDB: SNODB1622,

URS000081644F_9606 snoRNA 75 1

snOPY: Homo_sapiens300510,

URS00006A2AF1_9606 snoRNA 67 1

Rfam: RF00158,

SNORD82 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORD82 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD82 Gene

No ASD Table

Relevant External Links for SNORD82 Gene

GeneLoc Exon Structure for
SNORD82

Expression for SNORD82 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD82 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD82

genes like me logo Genes that share expression patterns with SNORD82: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD82 Gene

Orthologs for SNORD82 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD82 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD82 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD82 31
  • 83 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord82 31
  • 81 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD82 31
  • 79 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD82 31
  • 74 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORD82 31
  • 81 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORD82 31
  • 75 (a)
OneToOne
Species where no ortholog for SNORD82 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD82 Gene

ENSEMBL:
Gene Tree for SNORD82 (if available)
TreeFam:
Gene Tree for SNORD82 (if available)

Paralogs for SNORD82 Gene

No data available for Paralogs for SNORD82 Gene

Variants for SNORD82 Gene

Additional dbSNP identifiers (rs#s) for SNORD82 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD82 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV gain 17160897

Additional Variant Information for SNORD82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD82 Gene

Disorders for SNORD82 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SNORD82 Gene - From: DISEASES

Disorder Aliases PubMed IDs
dry beriberi
desmoid disease, hereditary
  • desmd
noonan syndrome 3
  • ns3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD82

genes like me logo Genes that share disorders with SNORD82: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD82 Gene

Publications for SNORD82 Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 2 3
  2. Genomic organization and chromosomal localization of the human nucleolin gene. (PMID: 2394707) Srivastava M … Burns AL (The Journal of biological chemistry 1990) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. U82, a novel snoRNA identified from the fifth intron of human and mouse nucleolin gene. (PMID: 10524220) Rebane A … Metspalu A (Biochimica et biophysica acta 1999) 3

Products for SNORD82 Gene

Sources for SNORD82 Gene