Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD82 Gene

Subcategory (RNA class) for SNORD82 Gene


Quality Score for this RNA gene is


Aliases for SNORD82 Gene

  • Small Nucleolar RNA, C/D Box 82 2 3 5
  • RNA, U82 Small Nucleolar 3
  • RNA, U82 Small Nuclear 2
  • RNU82 3
  • U82 3
  • Z25 3

External Ids for SNORD82 Gene

ORGUL Members for SNORD82 Gene

Previous HGNC Symbols for SNORD82 Gene

  • RNU82

Previous GeneCards Identifiers for SNORD82 Gene

  • GC02U900827
  • GC02M232034
  • GC02M232325
  • GC02M224166

Summaries for SNORD82 Gene

Entrez Gene Summary for SNORD82 Gene

  • The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD82 Gene

SNORD82 (Small Nucleolar RNA, C/D Box 82) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD82 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD82 Gene

Genomics for SNORD82 Gene

GeneHancer (GH) Regulatory Elements for SNORD82 Gene

Promoters and enhancers for SNORD82 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J231461 Enhancer 0.5 ENCODE 650.7 -1.5 -1483 0.1 HDGF HNRNPUL1 PKNOX1 POLR2A ZNF207 SNORD82 PIR44191 PIR31651 GC02M231516 GC02M231507 DIS3L2 RPL28P2 LOC101928816 NCL
GH02J231460 Enhancer 0.4 ENCODE 650.7 -0.1 -63 0.2 POLR2A CREB1 SNORD82 PIR44191 PIR31651 GC02M231516 GC02M231507 NCL
GH02J231463 Enhancer 0.3 ENCODE 650.7 -0.4 -423 0.2 CREB1 GC02M231507 SNORD82 PIR44191 PIR31651 GC02M231516 NCL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD82 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD82 gene promoter:
  • TBP
  • AML1a

Genomic Locations for SNORD82 Gene

Genomic Locations for SNORD82 Gene
75 bases
Minus strand
75 bases
Minus strand

Genomic View for SNORD82 Gene

Genes around SNORD82 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD82 Gene

Proteins for SNORD82 Gene

Post-translational modifications for SNORD82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD82 Gene

Domains & Families for SNORD82 Gene

Gene Families for SNORD82 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD82: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD82 Gene

Function for SNORD82 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD82 Gene

Localization for SNORD82 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD82 Gene

Pathways & Interactions for SNORD82 Gene

SuperPathways for SNORD82 Gene

No Data Available

Interacting Proteins for SNORD82 Gene

Gene Ontology (GO) - Biological Process for SNORD82 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD82 Gene

Drugs & Compounds for SNORD82 Gene

No Compound Related Data Available

Transcripts for SNORD82 Gene

mRNA/cDNA for SNORD82 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD82 Gene

No ASD Table

Relevant External Links for SNORD82 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD82 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD82 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD82 Gene:

genes like me logo Genes that share expression patterns with SNORD82: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD82 Gene

Orthologs for SNORD82 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD82 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD82 34
  • 100 (a)
(Canis familiaris)
Mammalia SNORD82 34
  • 83 (a)
(Mus musculus)
Mammalia Snord82 34
  • 81 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD82 34
  • 79 (a)
(Monodelphis domestica)
Mammalia SNORD82 34
  • 74 (a)
(Gallus gallus)
Aves SNORD82 34
  • 81 (a)
(Anolis carolinensis)
Reptilia SNORD82 34
  • 75 (a)
Species where no ortholog for SNORD82 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD82 Gene

Gene Tree for SNORD82 (if available)
Gene Tree for SNORD82 (if available)

Paralogs for SNORD82 Gene

No data available for Paralogs for SNORD82 Gene

Variants for SNORD82 Gene

Sequence variations from dbSNP and Humsavar for SNORD82 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000048639 -- 231,461,769(-) G/A upstream_transcript_variant
rs1002724853 -- 231,460,207(-) C/T downstream_transcript_variant
rs1002820079 -- 231,460,026(-) A/C downstream_transcript_variant
rs1004451236 -- 231,459,977(-) G/C downstream_transcript_variant
rs1006128043 -- 231,460,292(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD82 Gene

Variant ID Type Subtype PubMed ID
nsv834567 CNV gain 17160897

Additional Variant Information for SNORD82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD82 Gene

Disorders for SNORD82 Gene

Additional Disease Information for SNORD82

No disorders were found for SNORD82 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD82 Gene

Publications for SNORD82 Gene

  1. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 2 3 58
  2. Genomic organization and chromosomal localization of the human nucleolin gene. (PMID: 2394707) Srivastava M … Burns AL (The Journal of biological chemistry 1990) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. U82, a novel snoRNA identified from the fifth intron of human and mouse nucleolin gene. (PMID: 10524220) Rebane A … Metspalu A (Biochimica et biophysica acta 1999) 3 58

Products for SNORD82 Gene

Sources for SNORD82 Gene

Loading form....