Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD79 Gene

Subcategory (RNA class) for SNORD79 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD79 Gene

  • Small Nucleolar RNA, C/D Box 79 2 3
  • RNA, U103 Small Nucleolar 2 3
  • RNU103 3
  • U79 3
  • Z22 3

External Ids for SNORD79 Gene

ORGUL Members for SNORD79 Gene

Previous HGNC Symbols for SNORD79 Gene

  • RNU103

Previous GeneCards Identifiers for SNORD79 Gene

  • GC01U901413
  • GC01M172168
  • GC01M173834
  • GC01M173894
  • GC01M173901
  • GC01M173912
  • GC01M173925
  • GC01M173948
  • GC01M173956
  • GC01M174002
  • GC01M174016

Summaries for SNORD79 Gene

GeneCards Summary for SNORD79 Gene

SNORD79 (Small Nucleolar RNA, C/D Box 79) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD79 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD79 Gene

Genomics for SNORD79 Gene

GeneHancer (GH) Regulatory Elements for SNORD79 Gene

Promoters and enhancers for SNORD79 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -1.3 -1330 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174038 GC01M174039 GC01M174041 GC01M174042 GC01M174043 GC01M174045 GC01M174046 GC01M174047
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD79 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD79 gene promoter:
  • Ik-2
  • Pax-4a
  • deltaCREB
  • CREB
  • IRF-1
  • Elk-1
  • Evi-1
  • AML1a
  • CUTL1
  • NF-kappaB

Genomic Locations for SNORD79 Gene

Genomic Locations for SNORD79 Gene
chr1:173,865,350-173,865,430
(GRCh38/hg38)
Size:
81 bases
Orientation:
Minus strand
chr1:173,833,038-173,838,020
(GRCh37/hg19)
Size:
4,983 bases
Orientation:
Minus strand

Genomic View for SNORD79 Gene

Genes around SNORD79 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD79 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD79 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD79 Gene

Proteins for SNORD79 Gene

Post-translational modifications for SNORD79 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD79 Gene

Domains & Families for SNORD79 Gene

Gene Families for SNORD79 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD79: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD79 Gene

Function for SNORD79 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD79 Gene

Localization for SNORD79 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD79 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD79 Gene

Pathways & Interactions for SNORD79 Gene

SuperPathways for SNORD79 Gene

No Data Available

Interacting Proteins for SNORD79 Gene

Gene Ontology (GO) - Biological Process for SNORD79 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD79 Gene

Drugs & Compounds for SNORD79 Gene

No Compound Related Data Available

Transcripts for SNORD79 Gene

mRNA/cDNA for SNORD79 Gene

(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD79 Gene

No ASD Table

Relevant External Links for SNORD79 Gene

GeneLoc Exon Structure for
SNORD79
ECgene alternative splicing isoforms for
SNORD79

Expression for SNORD79 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD79 Gene:

SNORD79
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD79 Gene

Orthologs for SNORD79 Gene

No data available for Orthologs and Evolution for SNORD79 Gene

Paralogs for SNORD79 Gene

No data available for Paralogs for SNORD79 Gene

Variants for SNORD79 Gene

Sequence variations from dbSNP and Humsavar for SNORD79 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000056001 -- 173,867,389(-) G/A upstream_transcript_variant
rs1002607397 -- 173,866,052(-) A/C upstream_transcript_variant
rs1002617054 -- 173,865,916(-) A/G upstream_transcript_variant
rs1002649601 -- 173,865,510(-) C/T upstream_transcript_variant
rs1003069702 -- 173,865,815(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD79 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD79 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD79

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD79 Gene

Disorders for SNORD79 Gene

Additional Disease Information for SNORD79

No disorders were found for SNORD79 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD79 Gene

Publications for SNORD79 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 58
  2. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD79 Gene

Sources for SNORD79 Gene

Content
Loading form....