Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD78 Gene

Subcategory (RNA class) for SNORD78 Gene


Quality Score for this RNA gene is


Aliases for SNORD78 Gene

  • Small Nucleolar RNA, C/D Box 78 2 3
  • U78 3

External Ids for SNORD78 Gene

ORGUL Members for SNORD78 Gene

Previous GeneCards Identifiers for SNORD78 Gene

  • GC01U901239
  • GC01M172151
  • GC01M172162
  • GC01M172175
  • GC01M173838
  • GC01M173845
  • GC01M145059
  • GC01M173857
  • GC01M173867
  • GC01M173877
  • GC01M173886
  • GC01M173898
  • GC01M173914
  • GC01M173934
  • GC01M173944
  • GC01M173958
  • GC01M173974
  • GC01M173982
  • GC01M173986
  • GC01M173994
  • GC01M174004
  • GC01M174018

Summaries for SNORD78 Gene

GeneCards Summary for SNORD78 Gene

SNORD78 (Small Nucleolar RNA, C/D Box 78) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD78 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD78 Gene

Genomics for SNORD78 Gene

GeneHancer (GH) Regulatory Elements for SNORD78 Gene

Promoters and enhancers for SNORD78 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -1.1 -1074 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174038 GC01M174039 GC01M174041 GC01M174042 GC01M174043 GC01M174045 GC01M174046 GC01M174047
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD78 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD78 gene promoter:
  • Ik-2
  • deltaCREB
  • IRF-1
  • CREB
  • Pax-4a
  • AP-1
  • c-Fos
  • c-Jun
  • FosB
  • Fra-1

Genomic Locations for SNORD78 Gene

Genomic Locations for SNORD78 Gene
54 bases
Minus strand
65 bases
Minus strand

Genomic View for SNORD78 Gene

Genes around SNORD78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD78 Gene

Proteins for SNORD78 Gene

Post-translational modifications for SNORD78 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD78 Gene

Domains & Families for SNORD78 Gene

Gene Families for SNORD78 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD78: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD78 Gene

Function for SNORD78 Gene

Phenotypes From GWAS Catalog for SNORD78 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD78 Gene

Localization for SNORD78 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD78 Gene

Pathways & Interactions for SNORD78 Gene

SuperPathways for SNORD78 Gene

No Data Available

Interacting Proteins for SNORD78 Gene

Gene Ontology (GO) - Biological Process for SNORD78 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD78 Gene

Drugs & Compounds for SNORD78 Gene

No Compound Related Data Available

Transcripts for SNORD78 Gene

mRNA/cDNA for SNORD78 Gene

(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD78 Gene

No ASD Table

Relevant External Links for SNORD78 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD78 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD78 Gene:

genes like me logo Genes that share expression patterns with SNORD78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD78 Gene

Orthologs for SNORD78 Gene

No data available for Orthologs and Evolution for SNORD78 Gene

Paralogs for SNORD78 Gene

No data available for Paralogs for SNORD78 Gene

Variants for SNORD78 Gene

Sequence variations from dbSNP and Humsavar for SNORD78 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000056001 -- 173,867,389(-) G/A upstream_transcript_variant
rs1000127752 -- 173,867,669(-) A/G upstream_transcript_variant
rs1000640330 -- 173,867,622(-) A/G upstream_transcript_variant
rs1002607397 -- 173,866,052(-) A/C upstream_transcript_variant
rs1002617054 -- 173,865,916(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD78 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD78 Gene

Disorders for SNORD78 Gene

Additional Disease Information for SNORD78

No disorders were found for SNORD78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD78 Gene

Publications for SNORD78 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 58
  2. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 2 3 58
  3. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD78 Gene

Sources for SNORD78 Gene

Loading form....