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Aliases for SNORD77 Gene

Subcategory (RNA class) for SNORD77 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD77 Gene

  • Small Nucleolar RNA, C/D Box 77 2 3
  • SNORD77A 3
  • U77 3

External Ids for SNORD77 Gene

ORGUL Members for SNORD77 Gene

Previous GeneCards Identifiers for SNORD77 Gene

  • GC01U901238
  • GC01M172149
  • GC01M172160
  • GC01M172173
  • GC01M173844
  • GC01M173851
  • GC01M173856
  • GC01M173865
  • GC01M173875
  • GC01M173884
  • GC01M173893
  • GC01M173895
  • GC01M173908
  • GC01M173921
  • GC01M173927
  • GC01M173952
  • GC01M173965
  • GC01M174000
  • GC01M174010
  • GC01M174023

Summaries for SNORD77 Gene

GeneCards Summary for SNORD77 Gene

SNORD77 (Small Nucleolar RNA, C/D Box 77) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD77 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD77 Gene

Genomics for SNORD77 Gene

GeneHancer (GH) Regulatory Elements for SNORD77 Gene

Promoters and enhancers for SNORD77 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.4 -389 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174038 GC01M174039 GC01M174041 GC01M174042 GC01M174043 GC01M174045 GC01M174046 GC01M174047
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD77 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD77 gene promoter:
  • Ik-2
  • LCR-F1
  • CREB
  • IRF-1
  • deltaCREB
  • Pax-4a
  • AP-1
  • c-Fos
  • c-Jun
  • FosB

Genomic Locations for SNORD77 Gene

Genomic Locations for SNORD77 Gene
chr1:173,866,311-173,866,371
(GRCh38/hg38)
Size:
61 bases
Orientation:
Minus strand
chr1:173,833,038-173,838,020
(GRCh37/hg19)
Size:
4,983 bases
Orientation:
Minus strand

Genomic View for SNORD77 Gene

Genes around SNORD77 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD77 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD77 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD77 Gene

Proteins for SNORD77 Gene

Post-translational modifications for SNORD77 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD77 Gene

Domains & Families for SNORD77 Gene

Gene Families for SNORD77 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD77: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD77 Gene

Function for SNORD77 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD77 Gene

Localization for SNORD77 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD77 Gene

Pathways & Interactions for SNORD77 Gene

SuperPathways for SNORD77 Gene

No Data Available

Interacting Proteins for SNORD77 Gene

Gene Ontology (GO) - Biological Process for SNORD77 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD77 Gene

Drugs & Compounds for SNORD77 Gene

No Compound Related Data Available

Transcripts for SNORD77 Gene

mRNA/cDNA for SNORD77 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD77 Gene

No ASD Table

Relevant External Links for SNORD77 Gene

GeneLoc Exon Structure for
SNORD77
ECgene alternative splicing isoforms for
SNORD77

Expression for SNORD77 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD77 Gene:

SNORD77
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD77 Gene

Orthologs for SNORD77 Gene

No data available for Orthologs and Evolution for SNORD77 Gene

Paralogs for SNORD77 Gene

No data available for Paralogs for SNORD77 Gene

Variants for SNORD77 Gene

Sequence variations from dbSNP and Humsavar for SNORD77 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000056001 -- 173,867,389(-) G/A upstream_transcript_variant
rs1000127752 -- 173,867,669(-) A/G upstream_transcript_variant
rs1000500475 -- 173,868,214(-) T/G upstream_transcript_variant
rs1000607514 -- 173,867,847(-) G/A upstream_transcript_variant
rs1000640330 -- 173,867,622(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD77 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD77 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD77

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD77 Gene

Disorders for SNORD77 Gene

Additional Disease Information for SNORD77

No disorders were found for SNORD77 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD77 Gene

Publications for SNORD77 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 58
  2. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 2 3 58
  3. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD77 Gene

Sources for SNORD77 Gene

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