Aliases for SNORD76 Gene

Subcategory (RNA class) for SNORD76 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORD76 Gene

  • Small Nucleolar RNA, C/D Box 76 2 3
  • SNORD76 2 176
  • RF00069 174
  • U76 3

External Ids for SNORD76 Gene

Previous GeneCards Identifiers for SNORD76 Gene

  • GC01U901237
  • GC01M172154
  • GC01M172165
  • GC01M172177
  • GC01M173840
  • GC01M173847
  • GC01M173854
  • GC01M173858
  • GC01M173868
  • GC01M173878
  • GC01M173887
  • GC01M173899
  • GC01M173911
  • GC01M173924
  • GC01M174062
  • GC01M174077
  • GC01M173949
  • GC01M173963
  • GC01M173990
  • GC01M173998
  • GC01M174008
  • GC01M174022
  • GC01M174035
  • GC01M174048

Summaries for SNORD76 Gene

GeneCards Summary for SNORD76 Gene

SNORD76 (Small Nucleolar RNA, C/D Box 76) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD76 Gene

  • Small nucleolar RNA SNORD24

Additional gene information for SNORD76 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD76 Gene

Genomics for SNORD76 Gene

GeneHancer (GH) Regulatory Elements for SNORD76 Gene

Promoters and enhancers for SNORD76 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 0.0 -45 10.3 GTF3C2 E2F8 SIN3A SP1 ZBTB40 SREBF1 ZBTB6 FOXA1 MLX RBPJ CENPL ZBTB37 AF141346-003 AF141346-004 AF141346-005 GAS5-001 SNORA103-001 SNORD44 SNORD74 SNORD75
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD76 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD76 gene promoter:
  • AP-1
  • c-Fos
  • c-Jun
  • CREB
  • deltaCREB
  • FosB
  • Ik-2
  • IRF-1
  • LCR-F1
  • Pax-4a

Genomic Locations for SNORD76 Gene

Genomic Locations for SNORD76 Gene
chr1:173,866,634-173,866,715
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand
chr1:173,833,038-173,838,020
(GRCh37/hg19)
Size:
4,983 bases
Orientation:
Minus strand

Genomic View for SNORD76 Gene

Genes around SNORD76 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD76 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD76 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD76 Gene

Proteins for SNORD76 Gene

Post-translational modifications for SNORD76 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD76 Gene

Domains & Families for SNORD76 Gene

Gene Families for SNORD76 Gene

genes like me logo Genes that share domains with SNORD76: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD76 Gene

Function for SNORD76 Gene

Phenotypes From GWAS Catalog for SNORD76 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD76 Gene

Localization for SNORD76 Gene

Gene Ontology (GO) - Cellular Components for SNORD76 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD76: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD76 Gene

Pathways & Interactions for SNORD76 Gene

PathCards logo

SuperPathways for SNORD76 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD76 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD76: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD76 Gene

Drugs & Compounds for SNORD76 Gene

No Compound Related Data Available

Transcripts for SNORD76 Gene

mRNA/cDNA for SNORD76 Gene

(1) REFSEQ mRNAs :
(3) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD76 Gene

No ASD Table

Relevant External Links for SNORD76 Gene

GeneLoc Exon Structure for
SNORD76
ECgene alternative splicing isoforms for
SNORD76

Expression for SNORD76 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD76 Gene:

SNORD76
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD76 Gene

Orthologs for SNORD76 Gene

No data available for Orthologs and Evolution for SNORD76 Gene

Paralogs for SNORD76 Gene

No data available for Paralogs for SNORD76 Gene

Variants for SNORD76 Gene

Sequence variations from dbSNP and Humsavar for SNORD76 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000056001 -- 173,867,389(-) G/A upstream_transcript_variant
rs1000127752 -- 173,867,669(-) A/G upstream_transcript_variant
rs1000247329 -- 173,868,599(-) C/T upstream_transcript_variant
rs1000450082 -- 173,868,415(-) G/A upstream_transcript_variant
rs1000500475 -- 173,868,214(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD76 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD76 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD76

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD76 Gene

Disorders for SNORD76 Gene

Additional Disease Information for SNORD76

No disorders were found for SNORD76 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD76 Gene

Publications for SNORD76 Gene

  1. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. (PMID: 15556860) Tycowski KT … Steitz JA (Current biology : CB 2004) 2 3 56
  2. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 2 3 56
  3. Clinical significance of C/D box small nucleolar RNA U76 as an oncogene and a prognostic biomarker in hepatocellular carcinoma. (PMID: 28578939) Wu L … Yuan Y (Clinics and research in hepatology and gastroenterology 2018) 3 56
  4. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  5. SNORD76, a box C/D snoRNA, acts as a tumor suppressor in glioblastoma. (PMID: 25715874) Chen L … Kang C (Scientific reports 2015) 3 56

Products for SNORD76 Gene

Sources for SNORD76 Gene