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Aliases for SNORD73A Gene

Subcategory (RNA class) for SNORD73A Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD73A Gene

  • Small Nucleolar RNA, C/D Box 73A 2 3 5
  • RNA, U73 Small Nucleolar 2 3
  • U73A Small Nucleolar RNA 3
  • U73A SnoRNA 3
  • SnoRNA, U73 3
  • RNU73A 3
  • RNU73 3
  • U73a 3
  • U73 3

External Ids for SNORD73A Gene

ORGUL Members for SNORD73A Gene

Previous HGNC Symbols for SNORD73A Gene

  • RNU73

Previous GeneCards Identifiers for SNORD73A Gene

  • GC04P152244
  • GC04P152025
  • GC04P152030
  • GC04P152034
  • GC04P152040

Summaries for SNORD73A Gene

GeneCards Summary for SNORD73A Gene

SNORD73A (Small Nucleolar RNA, C/D Box 73A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD73A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD73A Gene

Genomics for SNORD73A Gene

GeneHancer (GH) Regulatory Elements for SNORD73A Gene

Promoters and enhancers for SNORD73A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J151126 Enhancer 0.3 FANTOM5 12.1 +23.3 23295 0.3 RXRA SNORD73A SNORD73B ENSG00000270681 LRBA SH3D19
GH04J151125 Enhancer 0.2 FANTOM5 12.1 +22.3 22276 0.3 SNORD73B SNORD73A RPS3A ENSG00000270681 SH3D19
GH04J151117 Enhancer 0.7 Ensembl 0.4 +13.8 13774 0.4 CTCF EBF1 FEZF1 ZNF384 RAD21 HNF4G SMC3 ZNF143 MIXL1 ZNF362 FAM160A1-DT FAM160A1 RPS3A SNORD73A ENSG00000270681 SH3D19
GH04J151112 Enhancer 0.3 FANTOM5 0.4 +8.4 8382 0.2 POLR2A SNORD73A ENSG00000270681 SH3D19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD73A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD73A gene promoter:
  • NRF-2
  • Ik-3
  • STAT5B
  • C/EBPalpha
  • COMP1
  • PPAR-gamma1
  • PPAR-gamma2
  • GATA-1
  • HEN1
  • E2F-5

Genomic Locations for SNORD73A Gene

Genomic Locations for SNORD73A Gene
chr4:151,103,827-151,103,891
(GRCh38/hg38)
Size:
65 bases
Orientation:
Plus strand
chr4:152,024,979-152,025,043
(GRCh37/hg19)
Size:
65 bases
Orientation:
Plus strand

Genomic View for SNORD73A Gene

Genes around SNORD73A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD73A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD73A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD73A Gene

Proteins for SNORD73A Gene

Post-translational modifications for SNORD73A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD73A Gene

Domains & Families for SNORD73A Gene

Gene Families for SNORD73A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD73A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD73A Gene

Function for SNORD73A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD73A Gene

Localization for SNORD73A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD73A Gene

Pathways & Interactions for SNORD73A Gene

SuperPathways for SNORD73A Gene

No Data Available

Interacting Proteins for SNORD73A Gene

Gene Ontology (GO) - Biological Process for SNORD73A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD73A Gene

Drugs & Compounds for SNORD73A Gene

No Compound Related Data Available

Transcripts for SNORD73A Gene

mRNA/cDNA for SNORD73A Gene

(6227) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD73A Gene

No ASD Table

Relevant External Links for SNORD73A Gene

GeneLoc Exon Structure for
SNORD73A
ECgene alternative splicing isoforms for
SNORD73A

Expression for SNORD73A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD73A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD73A Gene:

SNORD73A
genes like me logo Genes that share expression patterns with SNORD73A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD73A Gene

Orthologs for SNORD73A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD73A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD73 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord73a 34
  • 87 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD73 34
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD73 34
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD73 34 34
  • 80 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD73 34 34 34
  • 75 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD73 34
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD73 34
  • 64 (a)
OneToMany
Species where no ortholog for SNORD73A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD73A Gene

ENSEMBL:
Gene Tree for SNORD73A (if available)
TreeFam:
Gene Tree for SNORD73A (if available)

Paralogs for SNORD73A Gene

No data available for Paralogs for SNORD73A Gene

Variants for SNORD73A Gene

Sequence variations from dbSNP and Humsavar for SNORD73A Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000120214 -- 151,103,814(+) A/G upstream_transcript_variant
rs1000407038 -- 151,104,037(+) T/G downstream_transcript_variant
rs1000873413 -- 151,104,163(+) T/G downstream_transcript_variant
rs1001006030 -- 151,102,551(+) T/C upstream_transcript_variant
rs1001359684 -- 151,103,269(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD73A Gene

Variant ID Type Subtype PubMed ID
nsv964104 CNV duplication 23825009
nsv595690 CNV gain 21841781
nsv526976 CNV gain 19592680
nsv1028814 CNV gain 25217958
esv3602674 CNV gain 21293372
esv2763837 CNV gain+loss 21179565
dgv5436n100 CNV gain 25217958

Additional Variant Information for SNORD73A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD73A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD73A Gene

Disorders for SNORD73A Gene

Additional Disease Information for SNORD73A

No disorders were found for SNORD73A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD73A Gene

Publications for SNORD73A Gene

  1. A novel snoRNA (U73) is encoded within the introns of the human and mouse ribosomal protein S3a genes. (PMID: 9573378) Rebane A … Metspalu A (Gene 1998) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD73A Gene

Sources for SNORD73A Gene

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