Aliases for SNORD72 Gene

Data sources for SNORD72 Gene:

RNA type for SNORD72 Gene

snoRNA

Aliases for SNORD72 Gene

External Ids for SNORD72 Gene

Previous GeneCards Identifiers for SNORD72 Gene

  • GC05M040868
  • GC05M040784

Summaries for SNORD72 Gene

GeneCards Summary for SNORD72 Gene

SNORD72 (Small Nucleolar RNA, C/D Box 72) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD72 include Pediatric Infratentorial Ependymoma.

Rfam classification for SNORD72 Gene

  • Small nucleolar RNA SNORD72

Additional gene information for SNORD72 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD72 Gene

Genomics for SNORD72 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around SNORD72 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD72 gene promoter:
  • E47
  • HSF2
  • Ik-1
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • Nkx3-1 v3
  • Nkx3-1 v4
  • YY1
  • ZID

Genomic Locations for SNORD72 Gene

Latest Assembly
chr5:40,832,656-40,832,735
(GRCh38/hg38)
Size:
80 bases
Orientation:
Minus strand

Previous Assembly
chr5:40,832,758-40,832,837
(GRCh37/hg19 by Entrez Gene)
Size:
80 bases
Orientation:
Minus strand

chr5:40,832,758-40,832,837
(GRCh37/hg19 by Ensembl)
Size:
80 bases
Orientation:
Minus strand

Genomic View for SNORD72 Gene

Genes around SNORD72 on UCSC Golden Path with GeneCards custom track
SNORD72 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD72 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD72 Gene

Proteins for SNORD72 Gene

Post-translational modifications for SNORD72 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD72 Gene

Domains & Families for SNORD72 Gene

Gene Families for SNORD72 Gene

genes like me logo Genes that share domains with SNORD72: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD72 Gene

Function for SNORD72 Gene

Phenotypes From GWAS Catalog for SNORD72 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD72 Gene

Localization for SNORD72 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD72 gene
Compartment Confidence
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD72: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD72 Gene

Pathways & Interactions for SNORD72 Gene

PathCards logo

SuperPathways for SNORD72 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD72: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD72 Gene

Drugs & Compounds for SNORD72 Gene

No Compound Related Data Available

Transcripts for SNORD72 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD72 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000071E913_9606 snoRNA 80 5

RefSeq: NR_002583,

Ensembl: ENST00000390994 (view in UCSC) ,

Rfam: RF00577,

snoDB: SNODB1223,

snOPY: Homo_sapiens300547,

URS0001BC4648_9606 snoRNA 80 1

Rfam: RF00577,

SNORD72 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORD72 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD72 Gene

No ASD Table

Relevant External Links for SNORD72 Gene

GeneLoc Exon Structure for
SNORD72

Expression for SNORD72 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD72 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD72

genes like me logo Genes that share expression patterns with SNORD72: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD72 Gene

Orthologs for SNORD72 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD72 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD72 30
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD72 30
  • 91 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord72 30
  • 89 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD72 30
  • 88 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD72 30
  • 85 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD72 30
  • 79 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SNORD72 30
  • 74 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORD72 30
  • 75 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORD72 30 30
  • 78 (a)
OneToMany
Species where no ortholog for SNORD72 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD72 Gene

ENSEMBL:
Gene Tree for SNORD72 (if available)
TreeFam:
Gene Tree for SNORD72 (if available)
Alliance of Genome Resources:
Additional Orthologs for SNORD72

Paralogs for SNORD72 Gene

No data available for Paralogs for SNORD72 Gene

Variants for SNORD72 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD72 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD72 Gene

Variant ID Type Subtype PubMed ID
nsv518711 CNV loss 19592680
nsv597877 CNV gain 21841781
nsv968907 CNV duplication 23825009

Additional Variant Information for SNORD72 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD72
Leiden Open Variation Database (LOVD)
SNORD72

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD72 Gene

Disorders for SNORD72 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD72 Gene - From: COP

Disorder Aliases PubMed IDs
pediatric infratentorial ependymoma
  • childhood infratentorial ependymoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD72

genes like me logo Genes that share disorders with SNORD72: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD72 Gene

Publications for SNORD72 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD72 Gene

Sources for SNORD72 Gene