Aliases for SNORD70B Gene

Subcategory (RNA class) for SNORD70B Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORD70B Gene

  • Small Nucleolar RNA, C/D Box 70B 2 3 5
  • SNORD70L1 174
  • SNORD70B 2
  • RF00575 172

External Ids for SNORD70B Gene

Previous GeneCards Identifiers for SNORD70B Gene

  • GC00U936724
  • GC02U904341

Summaries for SNORD70B Gene

GeneCards Summary for SNORD70B Gene

SNORD70B (Small Nucleolar RNA, C/D Box 70B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD70B Gene

  • Small nucleolar RNA SNORD70

Additional gene information for SNORD70B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD70B Gene

Genomics for SNORD70B Gene

GeneHancer (GH) Regulatory Elements for SNORD70B Gene

Promoters and enhancers for SNORD70B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J202277 Enhancer 1 ENCODE dbSUPER 500.7 +0.3 301 2.1 CTCF JUND FOS EP300 REST CUX1 RAD21 FOXA2 OSR2 SMC3 SNORD70 SNORD70B NBEAL1 ALS2 NOP58 SNORD11B
GH02J202275 Enhancer 0.6 ENCODE dbSUPER 500.7 -1.7 -1715 1.2 FOS ZNF280D CEBPB STAT3 CEBPA SNORD70 SNORD70B piR-53514 NOP58
GH02J201805 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 9.1 -470.7 -470729 2.8 ZIC2 TRIM28 ZNF341 OSR2 WT1 ZBTB17 REST NR3C1 POLR2A FOSL1 ENSG00000202137 CDK15 ALS2 FZD7 RNU6-440P KIAA2012-AS1 SNORD70B NOP58 SNORD70
GH02J202221 Enhancer 0.8 Ensembl 11 -56.0 -56007 2.6 CTBP1 JUN OSR2 HDAC3 NCOR1 NEUROD1 TRIM25 ZNF316 NFIC MAFF NOP58 SNORD70 SNORD70B KIAA2012-AS1 ENSG00000273456 FAM117B ENSG00000231903 ENSG00000226261 RPL39P14 HSALNG0021598
GH02J202185 Enhancer 0.9 Ensembl ENCODE 9.9 -91.6 -91583 2.6 TCF7 FOXA2 NR2F2 ESRRA SAP130 CEBPB POLR2A ZBTB33 JUND MAX FZD7 KIAA2012-AS1 NOP58 SNORD70 SNORD70B ENSG00000273456 ICA1L BMPR2 ENSG00000231903 DAZAP2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD70B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD70B Gene

Genomic Locations for SNORD70B Gene
chr2:202,278,108-202,278,192
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr2:203,142,831-203,142,915
(GRCh37/hg19)
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD70B Gene

Genes around SNORD70B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD70B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD70B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD70B Gene

Proteins for SNORD70B Gene

Post-translational modifications for SNORD70B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD70B Gene

Domains & Families for SNORD70B Gene

Gene Families for SNORD70B Gene

genes like me logo Genes that share domains with SNORD70B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD70B Gene

Function for SNORD70B Gene

Phenotypes From GWAS Catalog for SNORD70B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD70B Gene

Localization for SNORD70B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD70B Gene

Pathways & Interactions for SNORD70B Gene

PathCards logo

SuperPathways for SNORD70B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD70B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD70B Gene

Drugs & Compounds for SNORD70B Gene

No Compound Related Data Available

Transcripts for SNORD70B Gene

mRNA/cDNA for SNORD70B Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD70B Gene

No ASD Table

Relevant External Links for SNORD70B Gene

GeneLoc Exon Structure for
SNORD70B

Expression for SNORD70B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD70B Gene

Orthologs for SNORD70B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD70B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD70 31
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26293 31
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD70 31
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD70 31
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD70 31
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD70 31
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD70 31
  • 76 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD70 31
  • 55 (a)
OneToMany
Species where no ortholog for SNORD70B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD70B Gene

ENSEMBL:
Gene Tree for SNORD70B (if available)
TreeFam:
Gene Tree for SNORD70B (if available)

Paralogs for SNORD70B Gene

No data available for Paralogs for SNORD70B Gene

Variants for SNORD70B Gene

Additional dbSNP identifiers (rs#s) for SNORD70B Gene

Additional Variant Information for SNORD70B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD70B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD70B Gene

Disorders for SNORD70B Gene

Additional Disease Information for SNORD70B

No disorders were found for SNORD70B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD70B Gene

Publications for SNORD70B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 54

No data available for Mastermind for SNORD70B Gene

Products for SNORD70B Gene

Sources for SNORD70B Gene