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Aliases for SNORD70 Gene

Subcategory (RNA class) for SNORD70 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD70 Gene

  • Small Nucleolar RNA, C/D Box 70 2 3 5
  • HBII-234 3
  • SNORD70A 3

External Ids for SNORD70 Gene

ORGUL Members for SNORD70 Gene

Previous GeneCards Identifiers for SNORD70 Gene

  • GC02U900832
  • GC02P202849
  • GC02P203141
  • GC02P194989

Summaries for SNORD70 Gene

GeneCards Summary for SNORD70 Gene

SNORD70 (Small Nucleolar RNA, C/D Box 70) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD70 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD70 Gene

Genomics for SNORD70 Gene

GeneHancer (GH) Regulatory Elements for SNORD70 Gene

Promoters and enhancers for SNORD70 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I202277 Enhancer 1 ENCODE dbSUPER 550.8 +2.0 1978 2.1 FOXA2 RAD21 ZNF335 ZNF366 FOS IKZF2 SMARCA5 ZNF654 ZNF362 CEBPB ENSG00000212309 GC02P202277 GC02P202279 SNORD70 NBEAL1 ALS2 GC02P202292 NOP58
GH02I202275 Enhancer 0.6 ENCODE dbSUPER 550.8 0.0 -38 1.2 ZNF280D CEBPA ENSG00000212309 GC02P202277 GC02P202279 PIR47513 SNORD70 NOP58
GH02I201805 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 9.2 -469.3 -469286 2.4 PKNOX1 MZF1 FEZF1 ZIC2 ZNF2 FOSL1 ZNF335 CTBP1 POLR2A PRDM10 ENSG00000202137 GC02P201809 CDK15 ALS2 FZD7 RNU6-440P LOC729224 NOP58 ENSG00000212309 SNORD70
GH02I202248 Enhancer 0.9 Ensembl ENCODE 12.1 -26.8 -26841 1.9 USF1 JUN MAX BACH1 SIN3A POLR2A TRIM24 NR2F6 FOS RFX1 SNORD70 ENSG00000212309 RNU6-440P ENSG00000273456 FAM117B LOC100287425 GC02P202236 NOP58
GH02I202316 Enhancer 0.8 Ensembl ENCODE 10.9 +40.9 40908 1.7 NFIB RAD21 NR2F2 ZSCAN21 ZNF335 PRDM6 POLR2A ZBTB48 SCRT2 PRDM10 GC02M202314 ENSG00000212309 SNORD70 NOP58 ENSG00000273456 BMPR2 GC02P202312 GC02P202309
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD70 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD70 gene promoter:

Genomic Locations for SNORD70 Gene

Genomic Locations for SNORD70 Gene
chr2:202,276,431-202,276,518
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr2:203,141,154-203,141,241
(GRCh37/hg19)

Genomic View for SNORD70 Gene

Genes around SNORD70 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD70 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD70 Gene

Proteins for SNORD70 Gene

Post-translational modifications for SNORD70 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD70 Gene

Domains & Families for SNORD70 Gene

Gene Families for SNORD70 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD70: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD70 Gene

Function for SNORD70 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD70 Gene

Localization for SNORD70 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD70 Gene

Pathways & Interactions for SNORD70 Gene

SuperPathways for SNORD70 Gene

No Data Available

Interacting Proteins for SNORD70 Gene

Gene Ontology (GO) - Biological Process for SNORD70 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD70 Gene

Drugs & Compounds for SNORD70 Gene

No Compound Related Data Available

Transcripts for SNORD70 Gene

mRNA/cDNA for SNORD70 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD70 Gene

No ASD Table

Relevant External Links for SNORD70 Gene

GeneLoc Exon Structure for
SNORD70
ECgene alternative splicing isoforms for
SNORD70

Expression for SNORD70 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD70 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD70 Gene:

SNORD70
genes like me logo Genes that share expression patterns with SNORD70: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD70 Gene

Orthologs for SNORD70 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD70 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD70 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD70 34
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord70 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD70 34
  • 84 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD70 34
  • 84 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD70 34 34
  • 61 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD70 34
  • 68 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD70 34
  • 59 (a)
OneToMany
Species where no ortholog for SNORD70 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD70 Gene

ENSEMBL:
Gene Tree for SNORD70 (if available)
TreeFam:
Gene Tree for SNORD70 (if available)

Paralogs for SNORD70 Gene

No data available for Paralogs for SNORD70 Gene

Variants for SNORD70 Gene

Sequence variations from dbSNP and Humsavar for SNORD70 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000174334 -- 202,276,201(+) G/A upstream_transcript_variant
rs1004974550 -- 202,274,541(+) G/A upstream_transcript_variant
rs1005773425 -- 202,274,814(+) C/T upstream_transcript_variant
rs1006537290 -- 202,276,137(+) G/A/C upstream_transcript_variant
rs1006929552 -- 202,274,458(+) T/C upstream_transcript_variant

Additional Variant Information for SNORD70 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD70 Gene

Disorders for SNORD70 Gene

Additional Disease Information for SNORD70

No disorders were found for SNORD70 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD70 Gene

Publications for SNORD70 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD70 Gene

Sources for SNORD70 Gene

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