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Aliases for SNORD69 Gene

Subcategory (RNA class) for SNORD69 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD69 Gene

  • Small Nucleolar RNA, C/D Box 69 2 3 5
  • HBII-210 3

External Ids for SNORD69 Gene

ORGUL Members for SNORD69 Gene

Previous GeneCards Identifiers for SNORD69 Gene

  • GC03U900640
  • GC03P052701
  • GC03P052726
  • GC03P052696
  • GC03P052711
  • GC03P052721
  • GC03P052739
  • GC03P052744
  • GC03P052749

Summaries for SNORD69 Gene

GeneCards Summary for SNORD69 Gene

SNORD69 (Small Nucleolar RNA, C/D Box 69) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD69 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD69 Gene

Genomics for SNORD69 Gene

GeneHancer (GH) Regulatory Elements for SNORD69 Gene

Promoters and enhancers for SNORD69 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I052769 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.5 +78.2 78151 2.1 HDGF FOXA2 SMAD1 ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 POLR2B NEK4 PBRM1 RRP9 RFT1 ITIH3 ITIH4-AS1 ENSG00000243696 ITIH4 SNORD69 GNL3
GH03I052668 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -22.1 -22079 3.7 HDGF BMI1 BATF IRF4 ATF7 FOS IKZF2 RUNX3 CREM CBFB PBRM1 SNORD69 NT5DC2 ITIH4 ITIH1 GLYCTK PRKCD STIMATE WDR82 GNL3
GH03I052427 Enhancer 1.5 VISTA Ensembl ENCODE 9.6 -263.2 -263195 3.2 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 ZNF143 ATF7 SP5 ZHX2 TNNC1 NISCH MIR135A1 GLYCTK-AS1 GLYCTK WDR82 GNL3 SNORD69 PBRM1 NT5DC2
GH03I052890 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.6 +199.9 199888 4.3 HDGF ATF1 FOXA2 MLX ARID4B DMAP1 IRF4 ETS1 YY1 ZNF207 ITIH4 ENSG00000243696 ITIH4-AS1 PBRM1 MUSTN1 SNORD69 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B
GH03I052719 Enhancer 1 Ensembl ENCODE dbSUPER 11.4 +28.7 28712 3.1 ZNF680 MAX REST GABPA POLR2A TRIM24 MYC RUNX3 TRIM28 ZNF558 PBRM1 GNL3 SNORD69 SNORD19 SNORD19B ENSG00000222345 ENSG00000252787 ITIH1 STAB1 SFMBT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD69 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD69 gene promoter:

Genomic Locations for SNORD69 Gene

Genomic Locations for SNORD69 Gene
chr3:52,692,736-52,692,812
(GRCh38/hg38)
Size:
77 bases
Orientation:
Plus strand
chr3:52,726,752-52,726,828
(GRCh37/hg19)

Genomic View for SNORD69 Gene

Genes around SNORD69 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD69 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD69 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD69 Gene

Proteins for SNORD69 Gene

Post-translational modifications for SNORD69 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD69 Gene

Domains & Families for SNORD69 Gene

Gene Families for SNORD69 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD69: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD69 Gene

Function for SNORD69 Gene

Phenotypes From GWAS Catalog for SNORD69 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD69 Gene

Localization for SNORD69 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD69 Gene

Pathways & Interactions for SNORD69 Gene

SuperPathways for SNORD69 Gene

No Data Available

Interacting Proteins for SNORD69 Gene

Gene Ontology (GO) - Biological Process for SNORD69 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD69 Gene

Drugs & Compounds for SNORD69 Gene

No Compound Related Data Available

Transcripts for SNORD69 Gene

mRNA/cDNA for SNORD69 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD69 Gene

No ASD Table

Relevant External Links for SNORD69 Gene

GeneLoc Exon Structure for
SNORD69
ECgene alternative splicing isoforms for
SNORD69

Expression for SNORD69 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD69 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD69 Gene:

SNORD69
genes like me logo Genes that share expression patterns with SNORD69: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD69 Gene

Orthologs for SNORD69 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD69 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD69 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD69 34
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD69 34
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord69 34
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD69 34
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD69 34
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD69 34
  • 63 (a)
OneToOne
Species where no ortholog for SNORD69 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD69 Gene

ENSEMBL:
Gene Tree for SNORD69 (if available)
TreeFam:
Gene Tree for SNORD69 (if available)

Paralogs for SNORD69 Gene

No data available for Paralogs for SNORD69 Gene

Variants for SNORD69 Gene

Sequence variations from dbSNP and Humsavar for SNORD69 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002056045 -- 52,692,913(+) T/C downstream_transcript_variant
rs1005852243 -- 52,691,398(+) T/G upstream_transcript_variant
rs1006451527 -- 52,692,890(+) C/T downstream_transcript_variant
rs1007612395 -- 52,692,572(+) C/T upstream_transcript_variant
rs1008077674 -- 52,692,231(+) A/G upstream_transcript_variant

Additional Variant Information for SNORD69 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD69

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD69 Gene

Disorders for SNORD69 Gene

Additional Disease Information for SNORD69

No disorders were found for SNORD69 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD69 Gene

Publications for SNORD69 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) Psychiatric GWAS Consortium Bipolar Disorder Working Group (Nature genetics 2011) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD69 Gene

Sources for SNORD69 Gene

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