SNORD68 Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 68

GC16P089635
GIFtS:
14
See more...

Aliases for SNORD68 Gene

Subcategory (RNA class) for SNORD68 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD68 Gene

  • Small Nucleolar RNA, C/D Box 68 2 3 5
  • SNORD68 2 5 170
  • HBII-202 2 3
  • HBII-202 Small Nucleolar RNA 3
  • HBII-202 SnoRNA 3
  • SNODB1786 177
  • SNODB1185 177
  • RF00324 168

External Ids for SNORD68 Gene

Previous GeneCards Identifiers for SNORD68 Gene

  • GC16P088157
  • GC16P089629
  • GC16P075323
  • GC16P089632
  • GC16P089636
  • GC16P089649
  • GC16P089658
  • GC16P089668
  • GC16P089563
  • GC16P089565
  • GC16P089610
  • GC16P089615
  • GC16P089614
  • GC16P089622
  • GC16P089568
  • GC16P089572
  • GC16P089581
  • GC16P089586
  • GC16P089591
  • GC16P089595
  • GC16P089600
  • GC16P089606

Summaries for SNORD68 Gene

GeneCards Summary for SNORD68 Gene

SNORD68 (Small Nucleolar RNA, C/D Box 68) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD68 Gene

  • Small nucleolar RNA MBII-202

Additional gene information for SNORD68 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD68 Gene

Genomics for SNORD68 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD68 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD68 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD68 gene promoter:
  • aMEF-2
  • AML1a
  • LCR-F1
  • MEF-2A
  • Olf-1
  • Pax-5
  • POU2F1
  • POU2F1a
  • RFX1

Genomic Locations for SNORD68 Gene

Genomic Locations for SNORD68 Gene
chr16:89,561,430-89,561,517
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr16:89,627,838-89,627,925
(GRCh37/hg19)
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD68 Gene

Genes around SNORD68 on UCSC Golden Path with GeneCards custom track
SNORD68 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD68 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD68 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD68 Gene

Proteins for SNORD68 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD68 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD68 Gene

Domains & Families for SNORD68 Gene

Gene Families for SNORD68 Gene

HGNC:
genes like me logo Genes that share domains with SNORD68: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD68 Gene

Function for SNORD68 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD68 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD68 Gene

Localization for SNORD68 Gene

Gene Ontology (GO) - Cellular Components for SNORD68 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD68: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD68 Gene

Pathways & Interactions for SNORD68 Gene

PathCards logo

SuperPathways for SNORD68 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD68 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD68: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD68 Gene

Drugs & Compounds for SNORD68 Gene

Products:

  1. Drug

(2) Drugs for SNORD68 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Docetaxel Approved, Investigational Pharma Microtubulin disassembly inhibitor, Tubulin and VEGF inhibitor, Taxanes 2330
Thalidomide Approved, Investigational, Withdrawn Pharma Immunomodulatory agent,sedative drug,angiogenesis inhibitor, TNF-alpha synthesis inhibitor, Immunomodulatory agents 429
genes like me logo Genes that share compounds with SNORD68: view

Transcripts for SNORD68 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD68 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D268_9606 snoRNA 72 4

HGNC: 32729,

RefSeq: NR_002450,

snoDB: SNODB1786,

snOPY: Homo_sapiens300596,

URS0000714052_9606 snoRNA 84 3

Ensembl: ENST00000363214 (view in UCSC) ,

Rfam: RF00324,

snoDB: SNODB1185,

SNORD68 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD68 Gene

No ASD Table

Relevant External Links for SNORD68 Gene

GeneLoc Exon Structure for
SNORD68

No data available for mRNA/cDNA for SNORD68 Gene

Expression for SNORD68 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD68 Gene

mRNA expression in normal human tissues for SNORD68 Gene
mRNA expression by BioGPS for SNORD68 GenemRNA expression by GTEx for SNORD68 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD68

genes like me logo Genes that share expression patterns with SNORD68: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD68 Gene

Orthologs for SNORD68 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD68 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia snoMBII-202 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia snoMBII-202 31
  • 85 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord68 31
  • 84 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia snoMBII-202 31
  • 81 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia snoMBII-202 31
  • 80 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia snoMBII-202 31
  • 80 (a)
 OneToOne
Zebrafish
(Danio rerio)
 Actinopterygii snoMBII-202 31
  • 73 (a)
 OneToOne
Species where no ortholog for SNORD68 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD68 Gene

ENSEMBL:
Gene Tree for SNORD68 (if available)
TreeFam:
Gene Tree for SNORD68 (if available)

Paralogs for SNORD68 Gene

No data available for Paralogs for SNORD68 Gene

Variants for SNORD68 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for SNORD68 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD68 Gene

Variant ID Type Subtype PubMed ID
esv2758670 CNV gain 17122850
esv3639587 CNV loss 21293372
esv3639588 CNV gain 21293372
nsv1063483 CNV gain 25217958
nsv1066382 CNV gain 25217958
nsv428331 CNV gain+loss 18775914
nsv471118 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv509639 CNV insertion 20534489
nsv573738 CNV loss 21841781

Additional Variant Information for SNORD68 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD68

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD68 Gene

Disorders for SNORD68 Gene

Additional Disease Information for SNORD68

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD68 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD68 Gene

Publications for SNORD68 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden BE (Progress in nucleic acid research and molecular biology 1990) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD68 gene in Mastermind

Products for SNORD68 Gene

Sources for SNORD68 Gene