Aliases for SNORD67 Gene

Subcategory (RNA class) for SNORD67 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD67 Gene

  • Small Nucleolar RNA, C/D Box 67 2 3 5
  • SNORD67 2 5 170
  • HBII-166 2 3
  • SNODB1946 177
  • RF00573 168

External Ids for SNORD67 Gene

Previous GeneCards Identifiers for SNORD67 Gene

  • GC11U900714
  • GC11M046740
  • GC11M046489
  • GC11M046783
  • GC11M047084
  • GC11M047929
  • GC11M055796
  • GC11M056009
  • GC11M056160
  • GC11M059678
  • GC11M050783
  • GC11M051578
  • GC11M052240
  • GC11M052900
  • GC11M053568
  • GC11M054234
  • GC11M054900
  • GC11M055598

Summaries for SNORD67 Gene

GeneCards Summary for SNORD67 Gene

SNORD67 (Small Nucleolar RNA, C/D Box 67) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD67 Gene

  • Small nucleolar RNA SNORD67

Additional gene information for SNORD67 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD67 Gene

Genomics for SNORD67 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD67 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J046639 Enhancer 1 Ensembl ENCODE dbSUPER 10.2 +122.2 122224 2.5 SOX13 FOXA2 CREM FOXP1 ZNF792 SPI1 HNF4A GLIS1 ZNF664 POLR2A ATG13 ZNF408 HARBI1 AMBRA1 F2 ARHGAP1 SNORD67 CKAP5 lnc-ARHGAP1-1 lnc-ZNF408-5
GH11J046647 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.4 +113.3 113288 2.8 ATF7 ZNF629 SP1 JUND ZBTB48 ATF2 NR2F2 TCF7L2 RAD21 HNF4A lnc-ARHGAP1-1 ATG13 ARHGAP1 ZNF408 HARBI1 F2 AMBRA1 CHRM4 SNORD67 CKAP5
GH11J046710 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.7 +51.2 51198 2.2 SP1 YY1 GABPA NR2F2 RXRA RAD21 MAX HNF4A SNORD67 CKAP5 ATG13 HARBI1 C11orf49 MYBPC3 HSALNG0084009 RF00017-909 F2 ZNF408
GH11J046686 Enhancer 0.7 Ensembl ENCODE dbSUPER 10.4 +74.8 74842 2.1 ZNF692 ZIC2 NR2F2 F2 SNORD67 CKAP5 ACP2 piR-44479 ARHGAP1 lnc-ATG13-1 HARBI1
GH11J046712 Enhancer 0.5 dbSUPER 10.7 +49.6 49572 0.5 BCOR ZMYM3 ADNP CHD4 IKZF5 KDM1A RXRA SNORD67 CKAP5 HARBI1 ATG13 LRP4 RF00017-909 F2 HSALNG0084009 ZNF408
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD67 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD67 gene promoter:
  • ATF-2
  • CRE-BP1
  • Egr-2
  • GATA-1
  • GCNF-1
  • HTF
  • POU2F1
  • POU2F1a
  • USF-1
  • USF1

Genomic Locations for SNORD67 Gene

Genomic Locations for SNORD67 Gene
chr11:46,762,389-46,762,499
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand
chr11:46,783,939-46,784,049
(GRCh37/hg19)
Size:
111 bases
Orientation:
Minus strand

Genomic View for SNORD67 Gene

Genes around SNORD67 on UCSC Golden Path with GeneCards custom track
SNORD67 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD67 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD67 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD67 Gene

Proteins for SNORD67 Gene

Post-translational modifications for SNORD67 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD67 Gene

Domains & Families for SNORD67 Gene

Gene Families for SNORD67 Gene

genes like me logo Genes that share domains with SNORD67: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD67 Gene

Function for SNORD67 Gene

Phenotypes From GWAS Catalog for SNORD67 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD67 Gene

Localization for SNORD67 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD67 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD67 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD67: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD67 Gene

Pathways & Interactions for SNORD67 Gene

PathCards logo

SuperPathways for SNORD67 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD67 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD67: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD67 Gene

Drugs & Compounds for SNORD67 Gene

No Compound Related Data Available

Transcripts for SNORD67 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD67 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006A5FBC_9606 snoRNA 111 6

HGNC: 32728,

RefSeq: NR_003056,

Ensembl: ENST00000390833 (view in UCSC) ,

Rfam: RF00573,

snoDB: SNODB1946,

snOPY: Homo_sapiens300738,

SNORD67 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD67 Gene

No ASD Table

Relevant External Links for SNORD67 Gene

GeneLoc Exon Structure for
SNORD67

No data available for mRNA/cDNA for SNORD67 Gene

Expression for SNORD67 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD67 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD67

SOURCE GeneReport for Unigene cluster for SNORD67 Gene:

Hs.693252
genes like me logo Genes that share expression patterns with SNORD67: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD67 Gene

Orthologs for SNORD67 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD67 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD67 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD67 31
  • 97 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord67 31
  • 97 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD67 31
  • 95 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD67 31
  • 85 (a)
OneToOne
Sea Squirt
(Ciona savignyi)
Ascidiacea SNORD67 31 31
  • 72 (a)
ManyToMany
Species where no ortholog for SNORD67 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD67 Gene

ENSEMBL:
Gene Tree for SNORD67 (if available)
TreeFam:
Gene Tree for SNORD67 (if available)

Paralogs for SNORD67 Gene

No data available for Paralogs for SNORD67 Gene

Variants for SNORD67 Gene

Additional dbSNP identifiers (rs#s) for SNORD67 Gene

Additional Variant Information for SNORD67 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD67

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD67 Gene

Disorders for SNORD67 Gene

Additional Disease Information for SNORD67

No disorders were found for SNORD67 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD67 Gene

Publications for SNORD67 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD67 Gene

Sources for SNORD67 Gene