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SNORD67 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 67

GCID:
GC11M054900
GIFtS:
17
Genes Participants
UDN Logo

Aliases for SNORD67 Gene

Subcategory (RNA class) for SNORD67 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD67 Gene

  • Small Nucleolar RNA, C/D Box 67 2 3 5
  • HBII-166 3

External Ids for SNORD67 Gene

ORGUL Members for SNORD67 Gene

Previous GeneCards Identifiers for SNORD67 Gene

  • GC11U900714
  • GC11M046740
  • GC11M046489
  • GC11M046783
  • GC11M047084
  • GC11M047929
  • GC11M050783
  • GC11M051578
  • GC11M052240
  • GC11M052900
  • GC11M053568
  • GC11M054234

Summaries for SNORD67 Gene

GeneCards Summary for SNORD67 Gene

SNORD67 (Small Nucleolar RNA, C/D Box 67) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD67 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD67 Gene

Genomics for SNORD67 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD67 Gene

Promoters and enhancers for SNORD67 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J046344 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 14.6 +412.6 412593 10.4 HDGF SMAD1 FOXA2 ARNT SIN3A ZNF2 YY1 E2F8 ZNF143 SP3 GC11P046351 DGKZ C11orf49 LOC105376662 ENSG00000255314 SNORD67 ENSG00000255447 ENSG00000254514 MDK CHRM4
GH11J046699 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.8 +61.6 61598 2.6 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF408 ARHGAP1 AMBRA1 ENSG00000270060 DDB2 CELF1 KBTBD4 ARFGAP2 SNORD67 LOC105376662
GH11J047213 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 -452.8 -452841 3.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 IRF4 DDB2 LRP4 PACSIN3 SNORD67 LOC100287189 LOC105376662 NUP160 FNBP4 ENSG00000270060 ZNF408
GH11J047577 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 14.6 -816.4 -816367 3.1 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 KBTBD4 ENSG00000231880 NDUFS3 NUP160 FNBP4 ENSG00000200090 ENSG00000270060 DDB2 ZNF408 CELF1
GH11J046647 Enhancer 1 Ensembl ENCODE dbSUPER 10.4 +113.3 113263 2.8 NFIA RXRA JUN RAD21 ATF2 NR2F2 SP1 JUND POLR2A ZBTB48 GC11M055307 ATG13 ARHGAP1 ZNF408 HARBI1 F2 AMBRA1 CHRM4 SNORD67 CKAP5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD67 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD67 gene promoter:
  • Egr-2
  • HTF
  • POU2F1a
  • POU2F1
  • USF1
  • USF-1
  • GCNF-1
  • GATA-1
  • ATF-2
  • CRE-BP1

Genomic Locations for SNORD67 Gene

Genomic Locations for SNORD67 Gene
chr11:46,762,389-46,762,499
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand
chr11:46,783,939-46,784,049
(GRCh37/hg19)
Size:
111 bases
Orientation:
Minus strand

Genomic View for SNORD67 Gene

Genes around SNORD67 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD67 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD67 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD67 Gene

Proteins for SNORD67 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD67 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD67 Gene

Domains & Families for SNORD67 Gene

Gene Families for SNORD67 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD67: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD67 Gene

Function for SNORD67 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD67 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD67 Gene

Localization for SNORD67 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD67 Gene

Pathways & Interactions for SNORD67 Gene

SuperPathways for SNORD67 Gene

PathCards logo More details on SuperPathways for SNORD67
No Data Available

Interacting Proteins for SNORD67 Gene

Gene Ontology (GO) - Biological Process for SNORD67 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD67 Gene

Drugs & Compounds for SNORD67 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD67 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD67 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for SNORD67 Gene

Small nucleolar RNA, C/D box 67:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD67 Gene

No ASD Table

Relevant External Links for SNORD67 Gene

GeneLoc Exon Structure for
SNORD67
ECgene alternative splicing isoforms for
SNORD67

Expression for SNORD67 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD67 Gene

mRNA expression in normal human tissues for SNORD67 Gene
mRNA expression by GTEx for SNORD67 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD67 Gene:

SNORD67

SOURCE GeneReport for Unigene cluster for SNORD67 Gene:

Hs.693252
genes like me logo Genes that share expression patterns with SNORD67: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD67 Gene

Orthologs for SNORD67 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD67 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD67 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD67 34
  • 97 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord67 34
  • 97 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD67 34
  • 95 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD67 34
  • 85 (a)
 OneToOne
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD67 34 34
  • 72 (a)
 ManyToMany
Species where no ortholog for SNORD67 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD67 Gene

ENSEMBL:
Gene Tree for SNORD67 (if available)
TreeFam:
Gene Tree for SNORD67 (if available)

Paralogs for SNORD67 Gene

No data available for Paralogs for SNORD67 Gene

Variants for SNORD67 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD67 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000248233 -- 46,762,840(-) G/T upstream_transcript_variant
rs1002693630 -- 46,763,962(-) A/G upstream_transcript_variant
rs1003667967 -- 46,764,307(-) A/C upstream_transcript_variant
rs1007326831 -- 46,761,988(-) G/T downstream_transcript_variant
rs1007560549 -- 46,763,090(-) G/A upstream_transcript_variant

Additional Variant Information for SNORD67 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD67

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD67 Gene

Disorders for SNORD67 Gene

Additional Disease Information for SNORD67

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD67 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD67 Gene

Publications for SNORD67 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD67 Gene

Sources for SNORD67 Gene

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