Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD65C Gene

Subcategory (RNA class) for SNORD65C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD65C Gene

  • Small Nucleolar RNA, C/D Box 65C 2 3 5

External Ids for SNORD65C Gene

ORGUL Members for SNORD65C Gene

Previous GeneCards Identifiers for SNORD65C Gene

  • GC00U936736
  • GC07U904742

Summaries for SNORD65C Gene

GeneCards Summary for SNORD65C Gene

SNORD65C (Small Nucleolar RNA, C/D Box 65C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD65C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD65C Gene

Genomics for SNORD65C Gene

GeneHancer (GH) Regulatory Elements for SNORD65C Gene

Promoters and enhancers for SNORD65C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I023396 Enhancer 0.5 ENCODE 550.8 +0.3 305 1.3 POLR2A ZSCAN4 ZNF398 ZKSCAN1 GC07P023398 SNORD65C KLHL7-AS1 KLHL7 GC07M023312 IGF2BP3
GH07I023394 Enhancer 0.3 ENCODE 550.8 -1.5 -1529 0.2 POLR2A GC07P023398 SNORD65C ENSG00000232627 GC07M023312 IGF2BP3
GH07I023345 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 12.2 -47.8 -47756 6.3 HDGF ARNT SIN3A TCF12 ZNF766 ATF7 FOS RUNX3 SMARCA4 ZNF184 KLHL7-AS1 SNORD65C IGF2BP3 RNU7-143P LOC541472 ENSG00000232627 MALSU1 GC07M023312
GH07I023372 Enhancer 1 Ensembl ENCODE 13.6 -22.9 -22862 2.1 PKNOX1 SMAD1 MZF1 BATF ZNF366 ZSCAN5C ATF7 ETV6 IKZF2 RUNX3 SNORD65C IGF2BP3 LOC389473 KLHL7-AS1 ENSG00000232627 GC07P023398 GC07M023312
GH07I023367 Enhancer 0.7 ENCODE 13.6 -28.1 -28112 1.3 HDGF PKNOX1 ZNF146 RBBP5 BATF ZNF664 ZNF366 NFATC1 ATF7 IKZF2 NUPL2 SNORD65C IGF2BP3 TRA2A LOC389473 ENSG00000232627 GC07P023398 GC07M023312
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD65C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD65C Gene

Genomic Locations for SNORD65C Gene
chr7:23,396,446-23,396,516
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand
chr7:23,436,065-23,436,135
(GRCh37/hg19)

Genomic View for SNORD65C Gene

Genes around SNORD65C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD65C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD65C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNORD65C Gene

Proteins for SNORD65C Gene

Post-translational modifications for SNORD65C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD65C Gene

Domains & Families for SNORD65C Gene

Gene Families for SNORD65C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD65C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD65C Gene

Function for SNORD65C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD65C Gene

Localization for SNORD65C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD65C Gene

Pathways & Interactions for SNORD65C Gene

SuperPathways for SNORD65C Gene

No Data Available

Interacting Proteins for SNORD65C Gene

Gene Ontology (GO) - Biological Process for SNORD65C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD65C Gene

Drugs & Compounds for SNORD65C Gene

No Compound Related Data Available

Transcripts for SNORD65C Gene

mRNA/cDNA for SNORD65C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD65C Gene

No ASD Table

Relevant External Links for SNORD65C Gene

GeneLoc Exon Structure for
SNORD65C
ECgene alternative splicing isoforms for
SNORD65C

Expression for SNORD65C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD65C Gene

Orthologs for SNORD65C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD65C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD65 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord65 34
  • 83 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORD65 34
  • 78 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD65 34
  • 72 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD65 34
  • 62 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD65 34
  • 59 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD65 34
  • 65 (a)
ManyToMany
Species where no ortholog for SNORD65C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD65C Gene

ENSEMBL:
Gene Tree for SNORD65C (if available)
TreeFam:
Gene Tree for SNORD65C (if available)

Paralogs for SNORD65C Gene

No data available for Paralogs for SNORD65C Gene

Variants for SNORD65C Gene

Additional Variant Information for SNORD65C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD65C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD65C Gene

Disorders for SNORD65C Gene

Additional Disease Information for SNORD65C

No disorders were found for SNORD65C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD65C Gene

Publications for SNORD65C Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 58

Products for SNORD65C Gene

Sources for SNORD65C Gene

Content
Loading form....