Aliases for SNORD65 Gene

Subcategory (RNA class) for SNORD65 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD65 Gene

  • Small Nucleolar RNA, C/D Box 65 2 3 5
  • SNORD65 2 5 170
  • HBII-135 2 3
  • SNORD65A 2 3
  • SNODB823 177
  • RF00571 168

External Ids for SNORD65 Gene

Previous GeneCards Identifiers for SNORD65 Gene

  • GC17U900621
  • GC17P016294
  • GC17P016299
  • GC17P016344

Summaries for SNORD65 Gene

GeneCards Summary for SNORD65 Gene

SNORD65 (Small Nucleolar RNA, C/D Box 65) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD65 include Type 1 Diabetes Mellitus 13.

Rfam classification for SNORD65 Gene

  • Small nucleolar RNA SNORD65

Additional gene information for SNORD65 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD65 Gene

Genomics for SNORD65 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD65 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 0.0 -18 7.2 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 REST TFE3 SIX5 ENSG00000266651 SNORD49A SNORD49B SNORD65 piR-31623 piR-42162 piR-61388 NCOR1 PIGL ENSG00000266538
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD65 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD65 gene promoter:
  • AML1a
  • AP-4
  • Evi-1
  • FOXJ2
  • FOXJ2 (long isoform)
  • MyoD
  • POU3F1
  • POU6F1 (c2)

Genomic Locations for SNORD65 Gene

Genomic Locations for SNORD65 Gene
chr17:16,441,226-16,441,298
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr17:16,342,136-16,381,992
(GRCh37/hg19)
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for SNORD65 Gene

Genes around SNORD65 on UCSC Golden Path with GeneCards custom track
SNORD65 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD65 Gene

Proteins for SNORD65 Gene

Post-translational modifications for SNORD65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD65 Gene

Domains & Families for SNORD65 Gene

Gene Families for SNORD65 Gene

genes like me logo Genes that share domains with SNORD65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD65 Gene

Function for SNORD65 Gene

Phenotypes From GWAS Catalog for SNORD65 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD65 Gene

Localization for SNORD65 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD65 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD65 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD65: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD65 Gene

Pathways & Interactions for SNORD65 Gene

PathCards logo

SuperPathways for SNORD65 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD65 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD65: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD65 Gene

Drugs & Compounds for SNORD65 Gene

No Compound Related Data Available

Transcripts for SNORD65 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD65 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006B6C71_9606 snoRNA 73 6

HGNC: 32726,

RefSeq: NR_003054,

Ensembl: ENST00000391079 (view in UCSC) ,

Rfam: RF00571,

snoDB: SNODB823,

snOPY: Homo_sapiens300705,

SNORD65 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD65 Gene

No ASD Table

Relevant External Links for SNORD65 Gene

GeneLoc Exon Structure for
SNORD65

No data available for mRNA/cDNA for SNORD65 Gene

Expression for SNORD65 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD65

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD65 Gene

Orthologs for SNORD65 Gene

Evolution for SNORD65 Gene

ENSEMBL:
Gene Tree for SNORD65 (if available)
TreeFam:
Gene Tree for SNORD65 (if available)

No data available for Orthologs for SNORD65 Gene

Paralogs for SNORD65 Gene

No data available for Paralogs for SNORD65 Gene

Variants for SNORD65 Gene

Additional dbSNP identifiers (rs#s) for SNORD65 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD65 Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Additional Variant Information for SNORD65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD65

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD65 Gene

Disorders for SNORD65 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD65 Gene - From: DISEASES

Disorder Aliases PubMed IDs
type 1 diabetes mellitus 13
  • diabetes mellitus, insulin-dependent, 13
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD65

genes like me logo Genes that share disorders with SNORD65: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD65 Gene

Publications for SNORD65 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD65 Gene

Sources for SNORD65 Gene