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Aliases for SNORD65 Gene

Subcategory (RNA class) for SNORD65 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD65 Gene

  • Small Nucleolar RNA, C/D Box 65 2 3 5
  • HBII-135 3
  • SNORD65A 3

External Ids for SNORD65 Gene

ORGUL Members for SNORD65 Gene

Previous GeneCards Identifiers for SNORD65 Gene

  • GC17U900621
  • GC17P016294
  • GC17P016299
  • GC17P016344

Summaries for SNORD65 Gene

GeneCards Summary for SNORD65 Gene

SNORD65 (Small Nucleolar RNA, C/D Box 65) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD65 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD65 Gene

Genomics for SNORD65 Gene

GeneHancer (GH) Regulatory Elements for SNORD65 Gene

Promoters and enhancers for SNORD65 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 650.7 +0.2 192 6.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC ENSG00000266651 GC17P016459 GC17P016461 GC17P016462 GC17P016463 GC17P016464 PIR56387 PIR32622 SNORD49A SNORD49B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD65 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD65 gene promoter:
  • FOXJ2 (long isoform)
  • FOXJ2
  • MyoD
  • Evi-1
  • AP-4
  • POU6F1 (c2)
  • AML1a
  • POU3F1

Genomic Locations for SNORD65 Gene

Genomic Locations for SNORD65 Gene
chr17:16,441,226-16,441,298
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr17:16,342,136-16,381,992
(GRCh37/hg19)
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for SNORD65 Gene

Genes around SNORD65 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD65 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD65 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD65 Gene

Proteins for SNORD65 Gene

Post-translational modifications for SNORD65 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD65 Gene

Domains & Families for SNORD65 Gene

Gene Families for SNORD65 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD65: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD65 Gene

Function for SNORD65 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD65 Gene

Localization for SNORD65 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD65 Gene

Pathways & Interactions for SNORD65 Gene

SuperPathways for SNORD65 Gene

No Data Available

Interacting Proteins for SNORD65 Gene

Gene Ontology (GO) - Biological Process for SNORD65 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD65 Gene

Drugs & Compounds for SNORD65 Gene

No Compound Related Data Available

Transcripts for SNORD65 Gene

mRNA/cDNA for SNORD65 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD65 Gene

No ASD Table

Relevant External Links for SNORD65 Gene

GeneLoc Exon Structure for
SNORD65
ECgene alternative splicing isoforms for
SNORD65

Expression for SNORD65 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD65 Gene:

SNORD65
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD65 Gene

Orthologs for SNORD65 Gene

Evolution for SNORD65 Gene

ENSEMBL:
Gene Tree for SNORD65 (if available)
TreeFam:
Gene Tree for SNORD65 (if available)

No data available for Orthologs for SNORD65 Gene

Paralogs for SNORD65 Gene

No data available for Paralogs for SNORD65 Gene

Variants for SNORD65 Gene

Sequence variations from dbSNP and Humsavar for SNORD65 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000969587 -- 16,440,870(+) T/C upstream_transcript_variant
rs1001938282 -- 16,440,339(+) T/C upstream_transcript_variant
rs1002456121 -- 16,440,499(+) T/C upstream_transcript_variant
rs1006098319 -- 16,440,991(+) C/T upstream_transcript_variant
rs1006420520 -- 16,441,754(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD65 Gene

Variant ID Type Subtype PubMed ID
nsv1063764 CNV loss 25217958
esv2715702 CNV deletion 23290073

Additional Variant Information for SNORD65 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD65

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD65 Gene

Disorders for SNORD65 Gene

Additional Disease Information for SNORD65

No disorders were found for SNORD65 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD65 Gene

Publications for SNORD65 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD65 Gene

Sources for SNORD65 Gene

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