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Aliases for SNORD61 Gene

Subcategory (RNA class) for SNORD61 Gene


Quality Score for this RNA gene is


Aliases for SNORD61 Gene

  • Small Nucleolar RNA, C/D Box 61 2 3 5
  • RNA, U61 Small Nuclear 2 3
  • HBII-342 3
  • RNU61 3
  • U61 3

External Ids for SNORD61 Gene

Previous HGNC Symbols for SNORD61 Gene

  • RNU61

Previous GeneCards Identifiers for SNORD61 Gene

  • GC0XM135789
  • GC0XM135961

Summaries for SNORD61 Gene

Entrez Gene Summary for SNORD61 Gene

  • Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box C/D class snoRNAs are involved in site-specific 2-prime-O-ribose methylation of preribosomal RNA precursors. This snoRNA is located in an intron of the RNA binding motif protein, X-linked gene (RBMX). [provided by RefSeq, Sep 2009]

GeneCards Summary for SNORD61 Gene

SNORD61 (Small Nucleolar RNA, C/D Box 61) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD61 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD61 Gene

Genomics for SNORD61 Gene

GeneHancer (GH) Regulatory Elements for SNORD61 Gene

Promoters and enhancers for SNORD61 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ136878 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.8 -799 2.9 PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B RBMX SNORD61 GC0XM136881 GC0XM136880 SRRM1P3 LOC100420958 ARHGEF6 ENSG00000232611
GH0XJ136850 Enhancer 0.6 Ensembl 0.3 +28.7 28670 0.8 SOX5 SOX13 GATAD2A FOXA2 CEBPB CEBPG NR2F2 IRF9 ATF4 PRDM6 ARHGEF6 ENSG00000232611 SNORD61 GC0XM136881 GC0XM136880 RBMX
GH0XJ136856 Enhancer 0.5 Ensembl 0.3 +22.7 22661 0.8 MEIS2 IKZF1 NBN BATF IKZF2 SPI1 ARHGEF6 ENSG00000232611 GC0XM136880 GC0XM136881 SNORD61 RBMX
GH0XJ136858 Enhancer 0.2 FANTOM5 0.3 +20.7 20677 0.2 HTATSF1 ENSG00000232611 SNORD61 GC0XM136881 GC0XM136880 RBMX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD61 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD61 gene promoter:

Genomic Locations for SNORD61 Gene

Genomic Locations for SNORD61 Gene
73 bases
Minus strand

Genomic View for SNORD61 Gene

Genes around SNORD61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD61 Gene

Proteins for SNORD61 Gene

Post-translational modifications for SNORD61 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD61 Gene

Domains & Families for SNORD61 Gene

Gene Families for SNORD61 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD61: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD61 Gene

Function for SNORD61 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD61 Gene

Localization for SNORD61 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD61 Gene

Pathways & Interactions for SNORD61 Gene

SuperPathways for SNORD61 Gene

No Data Available

Interacting Proteins for SNORD61 Gene

Gene Ontology (GO) - Biological Process for SNORD61 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD61 Gene

Drugs & Compounds for SNORD61 Gene

No Compound Related Data Available

Transcripts for SNORD61 Gene

mRNA/cDNA for SNORD61 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD61 Gene

No ASD Table

Relevant External Links for SNORD61 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD61 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD61 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD61 Gene:

genes like me logo Genes that share expression patterns with SNORD61: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD61 Gene

Orthologs for SNORD61 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD61 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SNORD61 34
  • 90 (a)
(Canis familiaris)
Mammalia SNORD61 34
  • 88 (a)
(Mus musculus)
Mammalia Snord61 34
  • 85 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD61 34
  • 79 (a)
(Monodelphis domestica)
Mammalia SNORD61 34
  • 74 (a)
(Gallus gallus)
Aves SNORD61 34
  • 78 (a)
(Danio rerio)
Actinopterygii SNORD61 34
  • 70 (a)
sea squirt
(Ciona savignyi)
Ascidiacea SNORD61 34
  • 70 (a)
Species where no ortholog for SNORD61 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD61 Gene

Gene Tree for SNORD61 (if available)
Gene Tree for SNORD61 (if available)

Paralogs for SNORD61 Gene

No data available for Paralogs for SNORD61 Gene

Variants for SNORD61 Gene

Sequence variations from dbSNP and Humsavar for SNORD61 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001125619 -- 136,880,687(-) G/A upstream_transcript_variant
rs1001739231 -- 136,881,188(-) T/C upstream_transcript_variant
rs1001871454 -- 136,880,227(-) T/C upstream_transcript_variant
rs1002277799 -- 136,880,406(-) C/T upstream_transcript_variant
rs1002837257 -- 136,880,294(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD61 Gene

Variant ID Type Subtype PubMed ID
esv3574735 CNV loss 25503493

Additional Variant Information for SNORD61 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD61 Gene

Disorders for SNORD61 Gene

Additional Disease Information for SNORD61

No disorders were found for SNORD61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD61 Gene

Publications for SNORD61 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  4. Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. (PMID: 21347282) Lettre G … Boerwinkle E (PLoS genetics 2011) 44 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD61 Gene

Sources for SNORD61 Gene

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