Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD60 Gene

Subcategory (RNA class) for SNORD60 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD60 Gene

  • Small Nucleolar RNA, C/D Box 60 2 3 5
  • RNA, U60 Small Nuclear 2 3
  • RNU60 3
  • U60 3

External Ids for SNORD60 Gene

Previous HGNC Symbols for SNORD60 Gene

  • RNU60

Previous GeneCards Identifiers for SNORD60 Gene

  • GC16M002147
  • GC16M002131
  • GC16M002206
  • GC16M002208
  • GC16M002210
  • GC16M002212
  • GC16M002214
  • GC16M002218
  • GC16M002221

Summaries for SNORD60 Gene

GeneCards Summary for SNORD60 Gene

SNORD60 (Small Nucleolar RNA, C/D Box 60) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD60 include Myeloproliferative Syndrome, Transient.

Additional gene information for SNORD60 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD60 Gene

Genomics for SNORD60 Gene

GeneHancer (GH) Regulatory Elements for SNORD60 Gene

Promoters and enhancers for SNORD60 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002147 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 673.7 -0.7 -685 17.4 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 TRAF7 SNORD60 SNHG19 ENSG00000281010 GC16M002156 GC16M002158 RAB26 ENSG00000261505 CRAMP1 ENSG00000260051
GH16J001308 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 64.1 +844.4 844351 5.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 UBE2I LOC102723815 WDR90 CRAMP1 ENSG00000261505 TELO2 ENSG00000260051 E4F1 TSC2 IFT140
GH16J003019 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 53 -867.2 -867198 5.2 MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 SP3 NFYC THOC6 HCFC1R1 TNFRSF12A ZNF263 ENSG00000261938 SRRM2 E4F1 CREBBP TSC2 ERVK13-1
GH16J002266 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 29.9 -113.1 -113107 3.2 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZNF610 GLIS1 RNPS1 ENSG00000260778 GC16M002266 GC16M002267 ZNF263 ENSG00000260051 ENSG00000261505 E4F1 AMDHD2 TSC2
GH16J002003 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.2 +147.9 147884 7.8 CLOCK DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SSRP1 ZNF610 ZNF598 NPW CRAMP1 ENSG00000261505 TBL3 ENSG00000255513 SRRM2 ENSG00000260051 SNORA64 TELO2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD60 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD60 gene promoter:

Genomic Locations for SNORD60 Gene

Genomic Locations for SNORD60 Gene
chr16:2,155,023-2,155,105
(GRCh38/hg38)
Size:
83 bases
Orientation:
Minus strand
chr16:2,205,024-2,205,106
(GRCh37/hg19)

Genomic View for SNORD60 Gene

Genes around SNORD60 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD60 Gene

Proteins for SNORD60 Gene

Post-translational modifications for SNORD60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD60 Gene

Domains & Families for SNORD60 Gene

Gene Families for SNORD60 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD60: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD60 Gene

Function for SNORD60 Gene

Phenotypes From GWAS Catalog for SNORD60 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD60 Gene

Localization for SNORD60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD60 Gene

Pathways & Interactions for SNORD60 Gene

SuperPathways for SNORD60 Gene

No Data Available

Interacting Proteins for SNORD60 Gene

Gene Ontology (GO) - Biological Process for SNORD60 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD60 Gene

Drugs & Compounds for SNORD60 Gene

No Compound Related Data Available

Transcripts for SNORD60 Gene

mRNA/cDNA for SNORD60 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD60 Gene

No ASD Table

Relevant External Links for SNORD60 Gene

GeneLoc Exon Structure for
SNORD60
ECgene alternative splicing isoforms for
SNORD60

Expression for SNORD60 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD60 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD60 Gene:

SNORD60
genes like me logo Genes that share expression patterns with SNORD60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD60 Gene

Orthologs for SNORD60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD60 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD60 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD60 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD60 34
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23519 34
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD60 34
  • 68 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD60 34
  • 68 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD60 34
  • 65 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD60 34 34
  • 68 (a)
ManyToMany
Species where no ortholog for SNORD60 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD60 Gene

ENSEMBL:
Gene Tree for SNORD60 (if available)
TreeFam:
Gene Tree for SNORD60 (if available)

Paralogs for SNORD60 Gene

No data available for Paralogs for SNORD60 Gene

Variants for SNORD60 Gene

Sequence variations from dbSNP and Humsavar for SNORD60 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000505285 -- 2,155,626(-) T/C upstream_transcript_variant
rs1000598022 -- 2,155,808(-) G/T upstream_transcript_variant
rs1001589685 -- 2,154,707(-) T/C downstream_transcript_variant
rs1002041677 -- 2,156,431(-) G/A upstream_transcript_variant
rs1002143455 -- 2,156,619(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD60 Gene

Variant ID Type Subtype PubMed ID
dgv4859n54 CNV loss 21841781
dgv4861n54 CNV loss 21841781
dgv4863n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1052260 CNV gain 25217958
nsv457349 CNV loss 19166990
nsv471072 CNV loss 18288195
nsv571190 CNV loss 21841781
nsv952902 CNV deletion 24416366

Additional Variant Information for SNORD60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD60 Gene

Disorders for SNORD60 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD60 Gene - From: DISEASES

Disorder Aliases PubMed IDs
myeloproliferative syndrome, transient
  • mst
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD60

genes like me logo Genes that share disorders with SNORD60: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD60 Gene

Publications for SNORD60 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD60 Gene

Sources for SNORD60 Gene

Content
Loading form....