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Aliases for SNORD6 Gene

Subcategory (RNA class) for SNORD6 Gene


Quality Score for this RNA gene is


Aliases for SNORD6 Gene

  • Small Nucleolar RNA, C/D Box 6 2 3 5
  • Mgh28S-2412 SnoRNA 3
  • Mgh28S-2412 3

External Ids for SNORD6 Gene

Previous GeneCards Identifiers for SNORD6 Gene

  • GC11M093146
  • GC11M093153
  • GC11M093159
  • GC11M093165
  • GC11M093171
  • GC11M093181
  • GC11M093192
  • GC11M093201
  • GC11M093465
  • GC11M093477
  • GC11M089541
  • GC11M093485
  • GC11M093501
  • GC11M093509
  • GC11M093517
  • GC11M093527
  • GC11M093538
  • GC11M093562
  • GC11M093733
  • GC11M093744
  • GC11M093933
  • GC11M093756
  • GC11M093766
  • GC11M093775
  • GC11M093784
  • GC11M093795
  • GC11M093806
  • GC11M093936
  • GC11M093920

Summaries for SNORD6 Gene

GeneCards Summary for SNORD6 Gene

SNORD6 (Small Nucleolar RNA, C/D Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD6 Gene

Genomics for SNORD6 Gene

GeneHancer (GH) Regulatory Elements for SNORD6 Gene

Promoters and enhancers for SNORD6 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J093731 Enhancer 0.4 ENCODE 600.7 -0.8 -838 1.1 ZBED1 POLR2A SUPT5H GC11M094040 GC11M094041 GC11M094042 GC11M094043 GC11M094045 GC11M094046 GC11M094047 GC11M094048 GC11M094049 GC11M094051
GH11J093783 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.3 -53.6 -53627 4 ZFX ELF3 MNT NKRF POLR2A ZNF121 ZSCAN21 CDC5L ZBTB7A ELF1 MED17 TAF1D C11orf54 SNORA1 MRE11 ANKRD49 SNORA40 SNORA18 SNORA25 SNORA32
GH11J093654 Enhancer 0.9 Ensembl ENCODE 10.1 +77.1 77073 5 CTCF EGR1 RAD21 IKZF2 TRIM22 SCRT2 RUNX3 RFX5 SMC3 JUNB GC11P093655 C11orf54 CEP295 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18
GH11J093796 Promoter 0.7 EPDnew 10.6 -64.9 -64949 0.1 RFX1 NCOR1 EMSY MED17 C11orf54 SNORA1 SNORA18 SNORA40 SNORA8 SNORD5 SNORD6 SNORA25 SNORA32
GH11J093768 Enhancer 0.6 Ensembl 11.9 -37.8 -37827 2 CBFA2T2 SOX13 SOX6 NFE2 ZNF530 KDM1A ZEB2 SOX5 CBFA2T3 CEP295 SNORA40 SNORA1 SNORA18 SNORA25 SNORA32 SNORA8 SNORD5 SNORD6 MED17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD6 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD6 gene promoter:
  • aMEF-2
  • GATA-1
  • GR
  • MEF-2
  • MEF-2A
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for SNORD6 Gene

Genomic Locations for SNORD6 Gene
73 bases
Minus strand
73 bases
Minus strand

Genomic View for SNORD6 Gene

Genes around SNORD6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD6 Gene

Proteins for SNORD6 Gene

Post-translational modifications for SNORD6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD6 Gene

Domains & Families for SNORD6 Gene

Gene Families for SNORD6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD6 Gene

Function for SNORD6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD6 Gene

Localization for SNORD6 Gene

Gene Ontology (GO) - Cellular Components for SNORD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD6 Gene

Pathways & Interactions for SNORD6 Gene

PathCards logo

SuperPathways for SNORD6 Gene

No Data Available

Interacting Proteins for SNORD6 Gene

Gene Ontology (GO) - Biological Process for SNORD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD6: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD6 Gene

Drugs & Compounds for SNORD6 Gene

No Compound Related Data Available

Transcripts for SNORD6 Gene

mRNA/cDNA for SNORD6 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD6 Gene

No ASD Table

Relevant External Links for SNORD6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD6 Gene:

genes like me logo Genes that share expression patterns with SNORD6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD6 Gene

Orthologs for SNORD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD6 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoZ40 35
  • 100 (a)
(Bos Taurus)
Mammalia snoZ40 35
  • 92 (a)
(Canis familiaris)
Mammalia snoZ40 35
  • 90 (a)
(Mus musculus)
Mammalia Gm24357 35
  • 89 (a)
(Monodelphis domestica)
Mammalia snoZ40 35
  • 88 (a)
(Ornithorhynchus anatinus)
Mammalia snoZ40 35
  • 88 (a)
(Gallus gallus)
Aves snoZ40 35
  • 81 (a)
(Anolis carolinensis)
Reptilia snoZ40 35
  • 83 (a)
(Danio rerio)
Actinopterygii snoZ40 35
  • 75 (a)
Species where no ortholog for SNORD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD6 Gene

Gene Tree for SNORD6 (if available)
Gene Tree for SNORD6 (if available)

Paralogs for SNORD6 Gene

No data available for Paralogs for SNORD6 Gene

Variants for SNORD6 Gene

Sequence variations from dbSNP and Humsavar for SNORD6 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001122861 -- 93,731,096(-) A/G downstream_transcript_variant
rs1002861927 -- 93,732,336(-) G/A/C upstream_transcript_variant
rs1003060913 -- 93,731,891(-) T/C upstream_transcript_variant
rs1004421250 -- 93,732,729(-) T/C/G upstream_transcript_variant
rs1006611468 -- 93,732,066(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD6 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORD6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD6 Gene

Disorders for SNORD6 Gene

Additional Disease Information for SNORD6

No disorders were found for SNORD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD6 Gene

Publications for SNORD6 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 58
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD6 Gene

Sources for SNORD6 Gene

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