Aliases for SNORD6 Gene

Subcategory (RNA class) for SNORD6 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD6 Gene

  • Small Nucleolar RNA, C/D Box 6 2 3 5
  • SNORD6 2 5 170
  • Mgh28S-2412 2 3
  • Mgh28S-2412 SnoRNA 3
  • SNODB682 177
  • RF00342 168
  • SNODB19 177

External Ids for SNORD6 Gene

Previous GeneCards Identifiers for SNORD6 Gene

  • GC11M093146
  • GC11M093153
  • GC11M093159
  • GC11M093165
  • GC11M093171
  • GC11M093181
  • GC11M093192
  • GC11M093201
  • GC11M093465
  • GC11M093477
  • GC11M089541
  • GC11M093485
  • GC11M093501
  • GC11M093509
  • GC11M093517
  • GC11M093527
  • GC11M093538
  • GC11M093562
  • GC11M093733
  • GC11M093744
  • GC11M093933
  • GC11M094030
  • GC11M094043
  • GC11M094221
  • GC11M093756
  • GC11M093766
  • GC11M093775
  • GC11M093784
  • GC11M093795
  • GC11M093806
  • GC11M093936
  • GC11M093920

Summaries for SNORD6 Gene

GeneCards Summary for SNORD6 Gene

SNORD6 (Small Nucleolar RNA, C/D Box 6) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD6 Gene

Additional gene information for SNORD6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD6 Gene

Genomics for SNORD6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J093731 Enhancer 0.6 Ensembl ENCODE 600.7 -0.8 -819 1.2 POLR2A RBFOX2 RBM22 SUPT5H POLR2B ZBED1 MIR1304 NONHSAG009375.2 SNORA1 SNORA18 SNORA25 SNORA32 SNORA8 SNORD5 SNORD6 piR-31447
GH11J093730 Enhancer 0.5 Ensembl 600.7 +1.5 1473 0.2 RBFOX2 POLR2A SUPT5H ZNF652 ZBED1 ENSG00000279696 SNORA25 SNORA32 SNORD6 piR-31447 lnc-TAF1D-1 CEP295 C11orf54 lnc-VSTM5-1 TAF1D
GH11J093783 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.3 -53.9 -53927 4.2 HNRNPL CREB1 GATAD2A ZNF629 ZNF512 LEF1 ZNF692 POLR2A BACH1 JUND MED17 TAF1D C11orf54 SNORA1 MRE11 ANKRD49 SNORA18 SNORA25 SNORA32 SNORA40
GH11J093654 Enhancer 0.8 Ensembl ENCODE 10.1 +77.2 77222 4.9 CTCF FOXA1 RAD21 TRIM22 SCRT2 EGR1 RUNX3 SMC3 RFX5 GATA3 C11orf54 CEP295 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18 SNORA8
GH11J093768 Enhancer 0.6 Ensembl 11.9 -37.9 -37927 1.8 SOX6 SOX13 NFE2 ZNF530 HDAC2 KDM1A ZEB2 SOX5 CBFA2T2 CBFA2T3 CEP295 SNORA40 SNORA1 SNORA18 SNORA25 SNORA32 SNORA8 SNORD5 SNORD6 MED17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD6 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD6 gene promoter:
  • aMEF-2
  • GATA-1
  • GR
  • MEF-2
  • MEF-2A
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for SNORD6 Gene

Genomic Locations for SNORD6 Gene
chr11:93,731,502-93,731,574
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr11:93,464,668-93,464,740
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for SNORD6 Gene

Genes around SNORD6 on UCSC Golden Path with GeneCards custom track
SNORD6 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD6 Gene

Proteins for SNORD6 Gene

Post-translational modifications for SNORD6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD6 Gene

Domains & Families for SNORD6 Gene

Gene Families for SNORD6 Gene

genes like me logo Genes that share domains with SNORD6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD6 Gene

Function for SNORD6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD6 Gene

Localization for SNORD6 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD6 gene
Compartment Confidence
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD6: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD6 Gene

Pathways & Interactions for SNORD6 Gene

PathCards logo

SuperPathways for SNORD6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD6: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD6 Gene

Drugs & Compounds for SNORD6 Gene

No Compound Related Data Available

Transcripts for SNORD6 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD6 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000066733_9606 snoRNA 71 5

HGNC: 32703,

RefSeq: NR_003036,

snoDB: SNODB19,

snOPY: Homo_sapiens300748,

ENA: AJ609489.1:1..71:ncRNA,

URS0000691595_9606 snoRNA 73 3

Ensembl: ENST00000365444 (view in UCSC) ,

Rfam: RF00342,

snoDB: SNODB682,

SNORD6 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORD6 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD6 Gene

No ASD Table

Relevant External Links for SNORD6 Gene

GeneLoc Exon Structure for
SNORD6

Expression for SNORD6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD6 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD6

genes like me logo Genes that share expression patterns with SNORD6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD6 Gene

Orthologs for SNORD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD6 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia snoZ40 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia snoZ40 31
  • 92 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia snoZ40 31
  • 90 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24357 31
  • 89 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia snoZ40 31
  • 88 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia snoZ40 31
  • 88 (a)
OneToMany
Chicken
(Gallus gallus)
Aves snoZ40 31
  • 81 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia snoZ40 31
  • 83 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii snoZ40 31
  • 75 (a)
OneToMany
Species where no ortholog for SNORD6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD6 Gene

ENSEMBL:
Gene Tree for SNORD6 (if available)
TreeFam:
Gene Tree for SNORD6 (if available)

Paralogs for SNORD6 Gene

No data available for Paralogs for SNORD6 Gene

Variants for SNORD6 Gene

Additional dbSNP identifiers (rs#s) for SNORD6 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD6 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORD6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD6 Gene

Disorders for SNORD6 Gene

Additional Disease Information for SNORD6

No disorders were found for SNORD6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD6 Gene

Publications for SNORD6 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD6 Gene

Sources for SNORD6 Gene