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Aliases for SNORD58B Gene

Subcategory (RNA class) for SNORD58B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD58B Gene

  • Small Nucleolar RNA, C/D Box 58B 2 3 5
  • RNA, U58B Small Nuclear 2 3
  • RNU58B 3
  • U58b 3

External Ids for SNORD58B Gene

ORGUL Members for SNORD58B Gene

Previous HGNC Symbols for SNORD58B Gene

  • RNU58B

Previous GeneCards Identifiers for SNORD58B Gene

  • GC18U900303
  • GC18M045286
  • GC18M045290
  • GC18M045292
  • GC18M045307
  • GC18M047018
  • GC18M043872
  • GC18M049492
  • GC18M049498
  • GC18M049500
  • GC18M049502
  • GC18M049504
  • GC18M049506
  • GC18M049508
  • GC18M049510

Summaries for SNORD58B Gene

GeneCards Summary for SNORD58B Gene

SNORD58B (Small Nucleolar RNA, C/D Box 58B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD58B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD58B Gene

Genomics for SNORD58B Gene

GeneHancer (GH) Regulatory Elements for SNORD58B Gene

Promoters and enhancers for SNORD58B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J049485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +1.9 1863 8.4 MLX FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC ZFP41 SSRP1 C18orf32 GC18M049490 GC18M049514 GC18M049515 GC18M049516 GC18M049517 GC18M049518 GC18M049519 GC18M049520 PIR54855
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD58B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD58B gene promoter:
  • POU2F1
  • Sox9
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2B
  • POU2F2C

Genomic Locations for SNORD58B Gene

Genomic Locations for SNORD58B Gene
chr18:49,491,664-49,491,729
(GRCh38/hg38)
Size:
66 bases
Orientation:
Minus strand
chr18:47,018,034-47,018,099
(GRCh37/hg19)
Size:
66 bases
Orientation:
Minus strand

Genomic View for SNORD58B Gene

Genes around SNORD58B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD58B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD58B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD58B Gene

Proteins for SNORD58B Gene

Post-translational modifications for SNORD58B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD58B Gene

Domains & Families for SNORD58B Gene

Gene Families for SNORD58B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD58B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD58B Gene

Function for SNORD58B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD58B Gene

Localization for SNORD58B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD58B Gene

Pathways & Interactions for SNORD58B Gene

SuperPathways for SNORD58B Gene

No Data Available

Interacting Proteins for SNORD58B Gene

Gene Ontology (GO) - Biological Process for SNORD58B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD58B Gene

Drugs & Compounds for SNORD58B Gene

No Compound Related Data Available

Transcripts for SNORD58B Gene

mRNA/cDNA for SNORD58B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD58B Gene

No ASD Table

Relevant External Links for SNORD58B Gene

GeneLoc Exon Structure for
SNORD58B
ECgene alternative splicing isoforms for
SNORD58B

Expression for SNORD58B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD58B Gene

Protein differential expression in normal tissues from HIPED for SNORD58B Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SNORD58B Gene



Protein tissue co-expression partners for SNORD58B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD58B Gene:

SNORD58B
genes like me logo Genes that share expression patterns with SNORD58B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD58B Gene

Orthologs for SNORD58B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD58B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD58 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD58 34
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord58b 34
  • 91 (a)
OneToMany
Gm22354 34
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD58 34 34
  • 85 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD58 34
  • 83 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD58 34
  • 81 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD58 34
  • 69 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD58 34
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD58 34
  • 64 (a)
ManyToMany
Species where no ortholog for SNORD58B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD58B Gene

ENSEMBL:
Gene Tree for SNORD58B (if available)
TreeFam:
Gene Tree for SNORD58B (if available)

Paralogs for SNORD58B Gene

No data available for Paralogs for SNORD58B Gene

Variants for SNORD58B Gene

Sequence variations from dbSNP and Humsavar for SNORD58B Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000701955 -- 49,492,482(-) A/G upstream_transcript_variant
rs1000813008 -- 49,492,437(-) C/A/T upstream_transcript_variant
rs1001163459 -- 49,492,530(-) A/T upstream_transcript_variant
rs1001237844 -- 49,492,188(-) C/T upstream_transcript_variant
rs1001704327 -- 49,492,884(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD58B Gene

Variant ID Type Subtype PubMed ID
nsv1065279 CNV gain 25217958
nsv2294 CNV deletion 18451855

Additional Variant Information for SNORD58B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD58B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD58B Gene

Disorders for SNORD58B Gene

Additional Disease Information for SNORD58B

No disorders were found for SNORD58B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD58B Gene

Publications for SNORD58B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD58B Gene

Sources for SNORD58B Gene

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