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Aliases for SNORD56B Gene

Subcategory (RNA class) for SNORD56B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD56B Gene

  • Small Nucleolar RNA, C/D Box 56B 2 3 5
  • RNA, U56B Small Nuclear 2 3
  • RNU56B 3

External Ids for SNORD56B Gene

ORGUL Members for SNORD56B Gene

Previous HGNC Symbols for SNORD56B Gene

  • RNU56B

Previous GeneCards Identifiers for SNORD56B Gene

  • GC14P070937
  • GC14P071865
  • GC14P052031

Summaries for SNORD56B Gene

GeneCards Summary for SNORD56B Gene

SNORD56B (Small Nucleolar RNA, C/D Box 56B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD56B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD56B Gene

Genomics for SNORD56B Gene

GeneHancer (GH) Regulatory Elements for SNORD56B Gene

Promoters and enhancers for SNORD56B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I071397 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.0 988 4.2 BACH1 EBF1 BMI1 BATF KLF5 RELA GATA3 POLR2A ATF7 ETV6 GC14P071399 SNORD56B PCNX1 SIPA1L1 LOC102724015 GC14P071408
GH14I071354 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -38.1 -38080 11.9 PKNOX1 SMAD1 ATF1 ARNT FEZF1 IRF4 TCF12 ZNF766 GATA2 ZNF143 SIPA1L1 SNORD56B PCNX1 LOC102724015 GC14M071365 GC14M071331
GH14I071335 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 -59.8 -59837 7 PKNOX1 FOXA2 ARID4B FEZF1 YY1 TCF12 ZNF766 ATF7 RXRA MIER2 SNORD56B LOC102724015 SIPA1L1 GC14M071331 GC14M071365
GH14I071328 Enhancer 0.9 ENCODE dbSUPER 10.9 -70.0 -69955 0.3 BACH1 EBF1 IRF4 RELA NFATC1 ATF7 IKZF2 RUNX3 CBFB HLF SNORD56B LOC729941 LOC102724015 SIPA1L1
GH14I071430 Enhancer 0.7 ENCODE 11.3 +32.5 32514 1.6 SMARCA5 PKNOX1 TRIM22 JUNB EBF1 DPF2 ATF2 IRF4 ZNF217 BCL11A SNORD56B RN7SL683P GC14P071408 SIPA1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD56B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD56B gene promoter:

Genomic Locations for SNORD56B Gene

Genomic Locations for SNORD56B Gene
chr14:71,398,337-71,398,407
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand
chr14:71,865,054-71,865,124
(GRCh37/hg19)

Genomic View for SNORD56B Gene

Genes around SNORD56B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD56B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD56B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD56B Gene

Proteins for SNORD56B Gene

Post-translational modifications for SNORD56B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD56B Gene

Domains & Families for SNORD56B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD56B Gene

Function for SNORD56B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD56B Gene

Localization for SNORD56B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD56B Gene

Pathways & Interactions for SNORD56B Gene

SuperPathways for SNORD56B Gene

No Data Available

Interacting Proteins for SNORD56B Gene

Gene Ontology (GO) - Biological Process for SNORD56B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD56B Gene

Drugs & Compounds for SNORD56B Gene

No Compound Related Data Available

Transcripts for SNORD56B Gene

mRNA/cDNA for SNORD56B Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD56B Gene

No ASD Table

Relevant External Links for SNORD56B Gene

GeneLoc Exon Structure for
SNORD56B
ECgene alternative splicing isoforms for
SNORD56B

Expression for SNORD56B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD56B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD56B Gene:

SNORD56B
genes like me logo Genes that share expression patterns with SNORD56B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD56B Gene

Orthologs for SNORD56B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD56B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD56 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD56 34 34
  • 90 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORD56 34 34
  • 89 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm23650 34
  • 89 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD56 34
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD56 34
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD56 34
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD56 34
  • 65 (a)
OneToMany
Species where no ortholog for SNORD56B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD56B Gene

ENSEMBL:
Gene Tree for SNORD56B (if available)
TreeFam:
Gene Tree for SNORD56B (if available)

Paralogs for SNORD56B Gene

No data available for Paralogs for SNORD56B Gene

Variants for SNORD56B Gene

Sequence variations from dbSNP and Humsavar for SNORD56B Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000565325 -- 71,398,719(+) G/T downstream_transcript_variant
rs1001739031 -- 71,396,619(+) A/G upstream_transcript_variant
rs1002738802 -- 71,398,141(+) G/A upstream_transcript_variant
rs1005697446 -- 71,396,523(+) C/A upstream_transcript_variant
rs1006754964 -- 71,397,449(+) C/G upstream_transcript_variant

Additional Variant Information for SNORD56B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD56B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD56B Gene

Disorders for SNORD56B Gene

Additional Disease Information for SNORD56B

No disorders were found for SNORD56B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD56B Gene

Publications for SNORD56B Gene

No publications were found for SNORD56B Gene.

Products for SNORD56B Gene

Sources for SNORD56B Gene

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