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Aliases for SNORD56 Gene

Subcategory (RNA class) for SNORD56 Gene


Quality Score for this RNA gene is


Aliases for SNORD56 Gene

  • Small Nucleolar RNA, C/D Box 56 2 3 5
  • RNA, U56 Small Nuclear 2 3
  • RNU56 3
  • U56 3

External Ids for SNORD56 Gene

Previous HGNC Symbols for SNORD56 Gene

  • RNU56

Previous GeneCards Identifiers for SNORD56 Gene

  • GC20P002591
  • GC20P002593
  • GC20P002597
  • GC20P002604
  • GC20P002609
  • GC20P002616
  • GC20P002637
  • GC20P002655
  • GC20P002717
  • GC20P002728
  • GC20P002737
  • GC20P002777
  • GC20P002820
  • GC20P002836
  • GC20P002851
  • GC20P002865

Summaries for SNORD56 Gene

GeneCards Summary for SNORD56 Gene

SNORD56 (Small Nucleolar RNA, C/D Box 56) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD56 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD56 Gene

Genomics for SNORD56 Gene

GeneHancer (GH) Regulatory Elements for SNORD56 Gene

Promoters and enhancers for SNORD56 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J002656 Promoter/Enhancer 1 EPDnew ENCODE 650.7 -0.6 -634 0.2 PAF1 HIC1 POLR2A ZNF837 ZKSCAN1 GC20P002891 GC20P002892 GC20P002893 GC20P002894 GC20P002896 GC20P002897 GC20P002900 NOP56 SNORD56 SNORD57
GH20J002655 Promoter/Enhancer 0.9 EPDnew ENCODE 650.7 -1.2 -1218 0.2 SSRP1 POLR2A GC20P002892 GC20P002893 GC20P002894 GC20P002896 GC20P002897 GC20P002900 NOP56 SNORD57 SNORD86 PIR58104
GH20J002659 Enhancer 0.7 ENCODE 650.7 +2.0 1956 0 KLF17 CDC5L KLF14 KMT2B ZNF335 POLR2B GLIS2 E2F8 POLR2A PATZ1 GC20P002896 GC20P002897 PIR58900 SNORD57 SNORD56 GC20P002895 GC20P002894 GC20P002891 UBOX5-AS1 IDH3B
GH20J002507 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 -147.9 -147854 2.6 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B ZNF766 ZNF343 ENSG00000256566 SNRPB TMC2 SNORD56 SNORD57 NOP56 ENSG00000228293 IDH3B GC20M002474
GH20J002751 Promoter/Enhancer 1.2 Ensembl ENCODE 10.4 +95.5 95478 0.6 CTCF ZNF792 RB1 DMAP1 GTF3C2 ZNF335 ZFHX2 VEZF1 EZH2 KLF11 VPS16 SNRPB ZNF343 PTPRA PCED1A C20orf141 ENSG00000241690 TMEM239 EBF4 NOP56
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD56 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD56 gene promoter:
  • S8
  • HEN1
  • AREB6
  • Pax-6
  • ZID
  • IRF-2
  • MZF-1
  • GR

Genomic Locations for SNORD56 Gene

Genomic Locations for SNORD56 Gene
71 bases
Plus strand
71 bases
Plus strand

Genomic View for SNORD56 Gene

Genes around SNORD56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD56 Gene

Proteins for SNORD56 Gene

Post-translational modifications for SNORD56 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD56 Gene

Domains & Families for SNORD56 Gene

Gene Families for SNORD56 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD56: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD56 Gene

Function for SNORD56 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD56 Gene

Localization for SNORD56 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD56 Gene

Pathways & Interactions for SNORD56 Gene

SuperPathways for SNORD56 Gene

No Data Available

Interacting Proteins for SNORD56 Gene

Gene Ontology (GO) - Biological Process for SNORD56 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD56 Gene

Drugs & Compounds for SNORD56 Gene

No Compound Related Data Available

Transcripts for SNORD56 Gene

mRNA/cDNA for SNORD56 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD56 Gene

No ASD Table

Relevant External Links for SNORD56 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD56 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD56 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD56 Gene:

genes like me logo Genes that share expression patterns with SNORD56: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD56 Gene

Orthologs for SNORD56 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD56 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD56 34
  • 100 (a)
(Mus musculus)
Mammalia Gm23650 34
  • 93 (a)
(Monodelphis domestica)
Mammalia SNORD56 34
  • 83 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD56 34
  • 79 (a)
(Gallus gallus)
Aves SNORD56 34
  • 73 (a)
(Anolis carolinensis)
Reptilia SNORD56 34
  • 67 (a)
Species where no ortholog for SNORD56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD56 Gene

Gene Tree for SNORD56 (if available)
Gene Tree for SNORD56 (if available)

Paralogs for SNORD56 Gene

No data available for Paralogs for SNORD56 Gene

Variants for SNORD56 Gene

Sequence variations from dbSNP and Humsavar for SNORD56 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs8958 likely-benign, not specified 2,656,425(+) T/C upstream_transcript_variant
rs148253797 uncertain-significance, not provided 2,657,163(+) C/T downstream_transcript_variant
rs1003826440 -- 2,656,443(+) T/C upstream_transcript_variant
rs1006362841 -- 2,654,929(+) C/T upstream_transcript_variant
rs1011728240 -- 2,654,945(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD56 Gene

Variant ID Type Subtype PubMed ID
nsv470535 CNV gain 18288195
nsv1057464 CNV gain 25217958
esv3644998 CNV gain 21293372

Additional Variant Information for SNORD56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD56 Gene

Disorders for SNORD56 Gene

Additional Disease Information for SNORD56

No disorders were found for SNORD56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD56 Gene

Publications for SNORD56 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD56 Gene

Sources for SNORD56 Gene

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