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Aliases for SNORD54 Gene

Subcategory (RNA class) for SNORD54 Gene


Quality Score for this RNA gene is


Aliases for SNORD54 Gene

  • Small Nucleolar RNA, C/D Box 54 2 3 5
  • RNA, U54 Small Nuclear 2 3
  • U54 Small Nuclear RNA 3
  • U54 SnoRNA 3
  • RNU54 3
  • U54 3

External Ids for SNORD54 Gene

ORGUL Members for SNORD54 Gene

Previous HGNC Symbols for SNORD54 Gene

  • RNU54

Previous GeneCards Identifiers for SNORD54 Gene

  • GC08M057152
  • GC08M056986

Summaries for SNORD54 Gene

GeneCards Summary for SNORD54 Gene

SNORD54 (Small Nucleolar RNA, C/D Box 54) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD54 Gene

Genomics for SNORD54 Gene

GeneHancer (GH) Regulatory Elements for SNORD54 Gene

Promoters and enhancers for SNORD54 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J056072 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.2 -219 2.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC RPS20 CERNA3 SNORD54 PIR49149 GC08M056077 GC08M056076 GC08M056075 TGS1 RNA5SP265 PSMC6P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD54 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD54 gene promoter:
  • p53
  • AP-2gamma
  • AP-2beta
  • AP-2alphaA
  • AP-2alpha
  • ISGF-3
  • c-Ets-1
  • RORalpha2
  • Ik-3
  • AP-1

Genomic Locations for SNORD54 Gene

Genomic Locations for SNORD54 Gene
67 bases
Minus strand
67 bases
Minus strand

Genomic View for SNORD54 Gene

Genes around SNORD54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD54 Gene

Proteins for SNORD54 Gene

Post-translational modifications for SNORD54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD54 Gene

Domains & Families for SNORD54 Gene

Gene Families for SNORD54 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD54: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD54 Gene

Function for SNORD54 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD54 Gene

Localization for SNORD54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD54 Gene

Pathways & Interactions for SNORD54 Gene

SuperPathways for SNORD54 Gene

No Data Available

Interacting Proteins for SNORD54 Gene

Gene Ontology (GO) - Biological Process for SNORD54 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD54 Gene

Drugs & Compounds for SNORD54 Gene

No Compound Related Data Available

Transcripts for SNORD54 Gene

mRNA/cDNA for SNORD54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD54 Gene

No ASD Table

Relevant External Links for SNORD54 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD54 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD54 Gene:

genes like me logo Genes that share expression patterns with SNORD54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD54 Gene

Orthologs for SNORD54 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD54 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoU54 34
  • 100 (a)
(Canis familiaris)
Mammalia snoU54 34
  • 84 (a)
(Mus musculus)
Mammalia Gm24016 34
  • 79 (a)
(Bos Taurus)
Mammalia snoU54 34 34
  • 79 (a)
(Monodelphis domestica)
Mammalia snoU54 34 34
  • 71 (a)
(Ornithorhynchus anatinus)
Mammalia snoU54 34 34
  • 69 (a)
(Gallus gallus)
Aves snoU54 34
  • 73 (a)
(Anolis carolinensis)
Reptilia snoU54 34
  • 66 (a)
(Danio rerio)
Actinopterygii snoU54 34
  • 58 (a)
Species where no ortholog for SNORD54 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD54 Gene

Gene Tree for SNORD54 (if available)
Gene Tree for SNORD54 (if available)

Paralogs for SNORD54 Gene

No data available for Paralogs for SNORD54 Gene

Variants for SNORD54 Gene

Sequence variations from dbSNP and Humsavar for SNORD54 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs863223400 uncertain-significance, not provided 56,073,725(-) TTT/TTTT downstream_transcript_variant
rs1000287653 -- 56,073,500(-) A/C downstream_transcript_variant
rs1000882533 -- 56,074,469(-) A/T upstream_transcript_variant
rs1005766518 -- 56,074,736(-) G/A/C upstream_transcript_variant
rs1006149928 -- 56,075,034(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD54 Gene

Variant ID Type Subtype PubMed ID
nsv524526 CNV loss 19592680
nsv831319 CNV gain 17160897

Additional Variant Information for SNORD54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD54 Gene

Disorders for SNORD54 Gene

Additional Disease Information for SNORD54

No disorders were found for SNORD54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD54 Gene

Publications for SNORD54 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD54 Gene

Sources for SNORD54 Gene

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