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Aliases for SNORD53B Gene

Subcategory (RNA class) for SNORD53B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD53B Gene

  • Small Nucleolar RNA, C/D Box 53B 2 3 5

External Ids for SNORD53B Gene

ORGUL Members for SNORD53B Gene

Previous GeneCards Identifiers for SNORD53B Gene

  • GC00U936743
  • GC02U904350
  • GC02P028928
  • GC02P028929

Summaries for SNORD53B Gene

GeneCards Summary for SNORD53B Gene

SNORD53B (Small Nucleolar RNA, C/D Box 53B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD53B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD53B Gene

Genomics for SNORD53B Gene

GeneHancer (GH) Regulatory Elements for SNORD53B Gene

Promoters and enhancers for SNORD53B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J028926 Enhancer 0.5 ENCODE 650.7 -0.4 -381 2.9 ATF4 POLR2A CBFB PRDM10 RUNX3 ENSG00000222224 GC02P028933 GC02P028935 GC02P028937 SNORD53 SNORD53B TRMT61B WDR43
GH02J028950 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.3 +23.9 23916 3 FOXA2 DMAP1 YY1 TCF12 RXRA MXD4 MIER2 REST NFIL3 MIER3 TOGARAM2 TRMT61B WDR43 PPP1CB SNORD53B
GH02J028955 Enhancer 0.9 Ensembl ENCODE 0.3 +28.5 28515 1 ELF3 CTCF USF1 SAP130 TEAD4 ERF RAD21 TEAD3 ZNF335 GATA3 TOGARAM2 TRMT61B SNORD53B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD53B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD53B Gene

Genomic Locations for SNORD53B Gene
chr2:28,927,983-28,928,060
(GRCh38/hg38)
Size:
78 bases
Orientation:
Plus strand
chr2:29,150,849-29,150,926
(GRCh37/hg19)
Size:
78 bases
Orientation:
Plus strand

Genomic View for SNORD53B Gene

Genes around SNORD53B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD53B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD53B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD53B Gene

Proteins for SNORD53B Gene

Post-translational modifications for SNORD53B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD53B Gene

Domains & Families for SNORD53B Gene

Gene Families for SNORD53B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD53B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD53B Gene

Function for SNORD53B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD53B Gene

Localization for SNORD53B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD53B Gene

Pathways & Interactions for SNORD53B Gene

SuperPathways for SNORD53B Gene

No Data Available

Interacting Proteins for SNORD53B Gene

Gene Ontology (GO) - Biological Process for SNORD53B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD53B Gene

Drugs & Compounds for SNORD53B Gene

No Compound Related Data Available

Transcripts for SNORD53B Gene

mRNA/cDNA for SNORD53B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD53B Gene

No ASD Table

Relevant External Links for SNORD53B Gene

GeneLoc Exon Structure for
SNORD53B
ECgene alternative splicing isoforms for
SNORD53B

Expression for SNORD53B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD53B Gene

Orthologs for SNORD53B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD53B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD53_SNORD92 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22858 34
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD53_SNORD92 34
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD53_SNORD92 34
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD53_SNORD92 34
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD53_SNORD92 34
  • 69 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD53_SNORD92 34 34 34 34 34
  • 61 (a)
ManyToMany
Species where no ortholog for SNORD53B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD53B Gene

ENSEMBL:
Gene Tree for SNORD53B (if available)
TreeFam:
Gene Tree for SNORD53B (if available)

Paralogs for SNORD53B Gene

No data available for Paralogs for SNORD53B Gene

Variants for SNORD53B Gene

Additional Variant Information for SNORD53B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD53B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD53B Gene

Disorders for SNORD53B Gene

Additional Disease Information for SNORD53B

No disorders were found for SNORD53B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD53B Gene

Publications for SNORD53B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 58

Products for SNORD53B Gene

Sources for SNORD53B Gene

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