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Aliases for SNORD53 Gene

Subcategory (RNA class) for SNORD53 Gene


Quality Score for this RNA gene is


Aliases for SNORD53 Gene

  • Small Nucleolar RNA, C/D Box 53 2 3 5
  • RNA, U53 Small Nuclear 2 3
  • SNORD53A 3
  • RNU53 3
  • U53 3

External Ids for SNORD53 Gene

ORGUL Members for SNORD53 Gene

Previous HGNC Symbols for SNORD53 Gene

  • RNU53

Previous GeneCards Identifiers for SNORD53 Gene

  • GC02P029003
  • GC02P029149
  • GC02P028931
  • GC02P028932

Summaries for SNORD53 Gene

GeneCards Summary for SNORD53 Gene

SNORD53 (Small Nucleolar RNA, C/D Box 53) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD53 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD53 Gene

Genomics for SNORD53 Gene

GeneHancer (GH) Regulatory Elements for SNORD53 Gene

Promoters and enhancers for SNORD53 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I028926 Enhancer 0.5 ENCODE 550.8 +0.5 535 2.9 ATF4 POLR2A CBFB PRDM10 RUNX3 ENSG00000222224 GC02P028930 GC02P028933 SNORD53 SNORD53B GC02P028935 TRMT61B WDR43
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD53 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD53 gene promoter:

Genomic Locations for SNORD53 Gene

Genomic Locations for SNORD53 Gene
78 bases
Plus strand

Genomic View for SNORD53 Gene

Genes around SNORD53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD53 Gene

Proteins for SNORD53 Gene

Post-translational modifications for SNORD53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD53 Gene

Domains & Families for SNORD53 Gene

Gene Families for SNORD53 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD53: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD53 Gene

Function for SNORD53 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD53 Gene

Localization for SNORD53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD53 Gene

Pathways & Interactions for SNORD53 Gene

SuperPathways for SNORD53 Gene

No Data Available

Interacting Proteins for SNORD53 Gene

Gene Ontology (GO) - Biological Process for SNORD53 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD53 Gene

Drugs & Compounds for SNORD53 Gene

No Compound Related Data Available

Transcripts for SNORD53 Gene

mRNA/cDNA for SNORD53 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD53 Gene

No ASD Table

Relevant External Links for SNORD53 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD53 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD53 Gene:

genes like me logo Genes that share expression patterns with SNORD53: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD53 Gene

Orthologs for SNORD53 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD53 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD53_SNORD92 34
  • 100 (a)
(Bos Taurus)
Mammalia SNORD53_SNORD92 34
  • 97 (a)
(Canis familiaris)
Mammalia SNORD53_SNORD92 34
  • 95 (a)
(Mus musculus)
Mammalia Snord53 34
  • 88 (a)
(Gallus gallus)
Aves SNORD53_SNORD92 34
  • 80 (a)
(Anolis carolinensis)
Reptilia SNORD53_SNORD92 34
  • 78 (a)
(Danio rerio)
Actinopterygii SNORD53_SNORD92 34 34 34 34 34
  • 59 (a)
Species where no ortholog for SNORD53 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD53 Gene

Gene Tree for SNORD53 (if available)
Gene Tree for SNORD53 (if available)

Paralogs for SNORD53 Gene

No data available for Paralogs for SNORD53 Gene

Variants for SNORD53 Gene

Sequence variations from dbSNP and Humsavar for SNORD53 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001229291 -- 28,925,767(+) C/T upstream_transcript_variant
rs1001283106 -- 28,925,935(+) A/G upstream_transcript_variant
rs1005024808 -- 28,925,640(+) A/G upstream_transcript_variant
rs1005861980 -- 28,927,390(+) G/C downstream_transcript_variant
rs1007278292 -- 28,927,378(+) CACA/CA downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD53 Gene

Variant ID Type Subtype PubMed ID
nsv1008490 CNV gain 25217958
nsv817695 CNV gain 17921354

Additional Variant Information for SNORD53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD53 Gene

Disorders for SNORD53 Gene

Additional Disease Information for SNORD53

No disorders were found for SNORD53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD53 Gene

Publications for SNORD53 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD53 Gene

Sources for SNORD53 Gene

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