Aliases for SNORD52 Gene

Subcategory (RNA class) for SNORD52 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD52 Gene

  • Small Nucleolar RNA, C/D Box 52 2 3 5
  • SNORD52 2 5 170
  • RNA, U52 Small Nuclear 2 3
  • U52 2 3
  • SNODB1196 177
  • SNODB1200 177
  • SNODB1199 177
  • SNODB1201 177

External Ids for SNORD52 Gene

Additional External Ids for SNORD52 Gene

Previous HGNC Symbols for SNORD52 Gene

  • RNU52

Previous GeneCards Identifiers for SNORD52 Gene

  • GC06P031914
  • GC06Pf31935
  • GC06P031802
  • GC06P031804
  • GC06P031591
  • GC06P031838
  • GC06P031841
  • GC06P032338
  • GC06P032523
  • GC06P032639
  • GC06P033432
  • GC06P031843
  • GC06P031880
  • GC06P031925
  • GC06P031928
  • GC06P031980
  • GC06P032037
  • GC06P032213
  • GC06P032244

Summaries for SNORD52 Gene

GeneCards Summary for SNORD52 Gene

SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD52 include Waisman Syndrome.

Rfam classification for SNORD52 Gene

  • Small nucleolar RNA SNORD52

Additional gene information for SNORD52 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD52 Gene

Genomics for SNORD52 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11.9 +26.9 26896 4.7 ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 REST ENSG00000203463-001 NEU1 lnc-NEU1-1 LY6G5B ATF6B DDX39B LSM2 GTF2H4 MSH5 SKIV2L
GH06J031813 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -10.8 -10844 26.3 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 SNHG32 HSPA1B HSPA1A HSPA1L RF00495 ATF6B DDX39B LY6G5B LSM2 CSNK2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD52 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD52 gene promoter:
  • ATF
  • CP2
  • Max1
  • MyoD
  • MZF-1
  • NF-kappaB
  • NF-kappaB1
  • Pax-5
  • PPAR-alpha

Genomic Locations for SNORD52 Gene

Genomic Locations for SNORD52 Gene
chr6:31,837,076-31,837,142
(GRCh38/hg38)
Size:
67 bases
Orientation:
Plus strand
chr6:31,804,853-31,804,919
(GRCh37/hg19)
Size:
67 bases
Orientation:
Plus strand

Genomic View for SNORD52 Gene

Genes around SNORD52 on UCSC Golden Path with GeneCards custom track
SNORD52 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD52 Gene

Proteins for SNORD52 Gene

Post-translational modifications for SNORD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD52 Gene

Domains & Families for SNORD52 Gene

Gene Families for SNORD52 Gene

genes like me logo Genes that share domains with SNORD52: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD52 Gene

Function for SNORD52 Gene

Phenotypes From GWAS Catalog for SNORD52 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD52 Gene

Localization for SNORD52 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD52 gene
Compartment Confidence
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD52: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD52 Gene

Pathways & Interactions for SNORD52 Gene

PathCards logo

SuperPathways for SNORD52 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD52: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD52 Gene

Drugs & Compounds for SNORD52 Gene

No Compound Related Data Available

Transcripts for SNORD52 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD52 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000716E7D_9606 snoRNA 64 4

HGNC: 10202,

RefSeq: NR_002742,

snoDB: SNODB1196, SNODB1197, SNODB1199, SNODB1200, SNODB1201,

snOPY: Homo_sapiens300529,

URS0000632610_9606 snoRNA 67 3

Ensembl: ENST00000364884 (view in UCSC) , ENST00000579069 (view in UCSC) , ENST00000582902 (view in UCSC) , ENST00000583541 (view in UCSC) , ENST00000583619 (view in UCSC) ,

Rfam: RF00276,

snoDB: SNODB307, SNODB308, SNODB309, SNODB310, SNODB311,

URS000011C781_9606 snoRNA 64 2

Rfam: RF00276,

ENA: X96651.1:1..66:ncRNA,

SNORD52 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORD52 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD52 Gene

No ASD Table

Relevant External Links for SNORD52 Gene

GeneLoc Exon Structure for
SNORD52

Expression for SNORD52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD52 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD52

genes like me logo Genes that share expression patterns with SNORD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD52 Gene

Orthologs for SNORD52 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD52 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD52 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD52 31
  • 88 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD52 31
  • 88 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord52 31
  • 82 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD52 31
  • 67 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORD52 31
  • 60 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii SNORD52 31 31 31 31 31 31 31 31
  • 54 (a)
OneToMany
Species where no ortholog for SNORD52 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD52 Gene

ENSEMBL:
Gene Tree for SNORD52 (if available)
TreeFam:
Gene Tree for SNORD52 (if available)

Paralogs for SNORD52 Gene

No data available for Paralogs for SNORD52 Gene

Variants for SNORD52 Gene

Additional dbSNP identifiers (rs#s) for SNORD52 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD52 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10461n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
esv3608569 CNV loss 21293372
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259

Additional Variant Information for SNORD52 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD52

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD52 Gene

Disorders for SNORD52 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD52 Gene - From: DISEASES

Disorder Aliases PubMed IDs
waisman syndrome
  • wsmn
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD52

genes like me logo Genes that share disorders with SNORD52: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD52 Gene

Publications for SNORD52 Gene

  1. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 3 41
  2. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD52 Gene

Sources for SNORD52 Gene