Free for academic non-profit institutions. Other users need a Commercial license
Aliases for SNORD52 Gene
Subcategory (RNA class) for SNORD52 Gene
snoRNA
Number of RNA Genes sources:
4 / 17
Aliases for SNORD52 Gene
External Ids for SNORD52 Gene
- HGNC: 10202
- Entrez Gene: 26797
- Ensembl: ENSG00000201754
Additional External Ids for SNORD52 Gene
Previous HGNC Symbols for SNORD52 Gene
- RNU52
Previous GeneCards Identifiers for SNORD52 Gene
- GC06P031914
- GC06Pf31935
- GC06P031802
- GC06P031804
- GC06P031591
- GC06P031838
- GC06P031841
- GC06P032338
- GC06P032523
- GC06P032639
- GC06P033432
- GC06P031843
- GC06P031880
- GC06P031925
- GC06P031928
- GC06P031980
- GC06P032037
- GC06P032213
- GC06P032244
Summaries for SNORD52 Gene
GeneCards Summary for SNORD52 Gene
SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD52 include Waisman Syndrome.
Rfam classification for SNORD52 Gene
-
Small nucleolar RNA SNORD52
Additional gene information for SNORD52 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD52 Gene
Genomics for SNORD52 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD52 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J031861 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE CraniofacialAtlas | 11.9 | +26.9 | 26896 | 4.7 | ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 REST | ENSG00000203463-001 NEU1 lnc-NEU1-1 LY6G5B ATF6B DDX39B LSM2 GTF2H4 MSH5 SKIV2L | |
| GH06J031813 | Promoter/Enhancer | 2.7 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | -10.8 | -10844 | 26.3 | RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 | SNHG32 HSPA1B HSPA1A HSPA1L RF00495 ATF6B DDX39B LY6G5B LSM2 CSNK2B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD52 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD52 gene promoter:
-
- ATF
- CP2
- Max1
- MyoD
- MZF-1
- NF-kappaB
- NF-kappaB1
- Pax-5
- PPAR-alpha
Genomic Locations for SNORD52 Gene
Genomic Locations for SNORD52 Gene
- chr6:31,837,076-31,837,142
- (GRCh38/hg38)
- Size:
- 67 bases
- Orientation:
- Plus strand
- chr6:31,804,853-31,804,919
- (GRCh37/hg19)
- Size:
- 67 bases
- Orientation:
- Plus strand
Genomic View for SNORD52 Gene
Genes around SNORD52 on UCSC Golden Path with GeneCards custom track
SNORD52 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p21.33 by HGNC
- 6p21.33 by Entrez Gene
- 6p21.33 by Ensembl
SNORD52 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD52 Gene
Proteins for SNORD52 Gene
Post-translational modifications for SNORD52 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD52
- Origene Custom Protein Services for SNORD52
No data available for DME Specific Peptides for SNORD52 Gene
Domains & Families for SNORD52 Gene
Gene Families for SNORD52 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD52 Gene
Function for SNORD52 Gene
Phenotypes From GWAS Catalog for SNORD52 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD52 - Select products 50% OFF >
- * SNORD52 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORD52
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD52 Gene
Localization for SNORD52 Gene
| Compartment | Confidence |
|---|---|
| mitochondrion | 1 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD52 Gene
Pathways & Interactions for SNORD52 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD52 Gene
Transcripts for SNORD52 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD52 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000716E7D_9606 | snoRNA | 64 | 4 |
HGNC: 10202, RefSeq: NR_002742, snoDB: SNODB1196, SNODB1197, SNODB1199, SNODB1200, SNODB1201, snOPY: Homo_sapiens300529, |
| URS0000632610_9606 | snoRNA | 67 | 3 |
Ensembl: ENST00000364884 (view in UCSC) , ENST00000579069 (view in UCSC) , ENST00000582902 (view in UCSC) , ENST00000583541 (view in UCSC) , ENST00000583619 (view in UCSC) , Rfam: RF00276, |
| URS000011C781_9606 | snoRNA | 64 | 2 |
Rfam: RF00276, ENA: X96651.1:1..66:ncRNA, |
SNORD52 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for SNORD52 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD52 - Select products 50% OFF >
- * SNORD52 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORD52
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for SNORD52 Gene
- GeneLoc Exon Structure for
- SNORD52
Expression for SNORD52 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD52
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD52 Gene
Orthologs for SNORD52 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORD52 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORD52 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORD52 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | Snord52 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORD52 31 |
|
OneToOne | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORD52 31 |
|
OneToOne | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORD52 31 31 31 31 31 31 31 31 |
|
OneToMany |
- Species where no ortholog for SNORD52 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORD52 Gene
No data available for Paralogs for SNORD52 Gene
Variants for SNORD52 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv10403n54 | CNV | loss | 21841781 |
| dgv10404n54 | CNV | loss | 21841781 |
| dgv10461n54 | CNV | loss | 21841781 |
| dgv10463n54 | CNV | loss | 21841781 |
| esv3608569 | CNV | loss | 21293372 |
| nsv1073969 | CNV | deletion | 25765185 |
| nsv1112900 | CNV | deletion | 24896259 |
| nsv1126749 | CNV | deletion | 24896259 |
Additional Variant Information for SNORD52 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD52
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD52 Gene
Disorders for SNORD52 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| waisman syndrome |
|
|
Search SNORD52 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNORD52
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD52 Gene
Publications for SNORD52 Gene
- Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 3 41
- Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORD52 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD52
- Origene Custom Protein Services for SNORD52
- Browse OriGene Inhibitory RNA Products For SNORD52
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD52
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD52
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD52
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD52
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD52
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD52
Sources for SNORD52 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB