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SNORD52 (Small Nucleolar RNA, C/D Box 52) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD52 include Waisman Syndrome.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH06J031861 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE CraniofacialAtlas | 11.9 | +26.9 | 26896 | 4.7 | ZNF221 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF PRDM10 ZNF629 REST | ENSG00000203463-001 NEU1 lnc-NEU1-1 LY6G5B ATF6B DDX39B LSM2 GTF2H4 MSH5 SKIV2L | |
GH06J031813 | Promoter/Enhancer | 2.7 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | -10.8 | -10844 | 26.3 | RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 | SNHG32 HSPA1B HSPA1A HSPA1L RF00495 ATF6B DDX39B LY6G5B LSM2 CSNK2B |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005730 | nucleolus | IEA | -- |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000716E7D_9606 | snoRNA | 64 | 4 |
HGNC: 10202, RefSeq: NR_002742, snoDB: SNODB1196, SNODB1197, SNODB1199, SNODB1200, SNODB1201, snOPY: Homo_sapiens300529, |
URS0000632610_9606 | snoRNA | 67 | 3 |
Ensembl: ENST00000364884 (view in UCSC) , ENST00000579069 (view in UCSC) , ENST00000582902 (view in UCSC) , ENST00000583541 (view in UCSC) , ENST00000583619 (view in UCSC) , Rfam: RF00276, |
URS000011C781_9606 | snoRNA | 64 | 2 |
Rfam: RF00276, ENA: X96651.1:1..66:ncRNA, |
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | SNORD52 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | SNORD52 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | SNORD52 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Snord52 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | SNORD52 31 |
|
OneToOne | |
Lizard (Anolis carolinensis) |
Reptilia | SNORD52 31 |
|
OneToOne | |
Zebrafish (Danio rerio) |
Actinopterygii | SNORD52 31 31 31 31 31 31 31 31 |
|
OneToMany |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv10403n54 | CNV | loss | 21841781 |
dgv10404n54 | CNV | loss | 21841781 |
dgv10461n54 | CNV | loss | 21841781 |
dgv10463n54 | CNV | loss | 21841781 |
esv3608569 | CNV | loss | 21293372 |
nsv1073969 | CNV | deletion | 25765185 |
nsv1112900 | CNV | deletion | 24896259 |
nsv1126749 | CNV | deletion | 24896259 |
Disorder | Aliases | PubMed IDs |
---|---|---|
waisman syndrome |
|
|