Aliases for SNORD5 Gene

Subcategory (RNA class) for SNORD5 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD5 Gene

  • Small Nucleolar RNA, C/D Box 5 2 3 5
  • SNORD5 2 176
  • Mgh28S-2410 SnoRNA 3
  • Mgh28S-2410 3
  • RF01161 174

External Ids for SNORD5 Gene

Previous GeneCards Identifiers for SNORD5 Gene

  • GC11M093145
  • GC11M093149
  • GC11M093156
  • GC11M093162
  • GC11M093168
  • GC11M093178
  • GC11M093187
  • GC11M093198
  • GC11M093469
  • GC11M093475
  • GC11M093483
  • GC11M093499
  • GC11M093507
  • GC11M093515
  • GC11M093525
  • GC11M093541
  • GC11M093565
  • GC11M093736
  • GC11M093747
  • GC11M093945
  • GC11M094033
  • GC11M093759
  • GC11M093769
  • GC11M093778
  • GC11M093787
  • GC11M093799
  • GC11M093809
  • GC11M093939
  • GC11M093925

Summaries for SNORD5 Gene

GeneCards Summary for SNORD5 Gene

SNORD5 (Small Nucleolar RNA, C/D Box 5) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD5 Gene

  • Small nucleolar RNA SNORD5

Additional gene information for SNORD5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD5 Gene

Genomics for SNORD5 Gene

GeneHancer (GH) Regulatory Elements for SNORD5 Gene

Promoters and enhancers for SNORD5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J093731 Enhancer 0.6 Ensembl ENCODE 750.6 +0.9 907 1.2 POLR2A ZBED1 SUPT5H MIR1304 NONHSAG009375.2 SNORA1 SNORA18 SNORA25 SNORA32 SNORA8 SNORD5 SNORD6 piR-31447
GH11J093783 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.3 -52.2 -52201 4.2 ZNF785 ZBTB40 CTCF ZBTB6 RBPJ POLR2A CREB1 HCFC1 ELF1 HLF MED17 TAF1D C11orf54 SNORA1 ENSG00000255233 ENSG00000255127 ENSG00000233536 ENSG00000254874 MRE11 CEP295
GH11J093654 Enhancer 0.8 Ensembl ENCODE 9.9 +78.9 78948 4.9 CTCF MAX RAD21 EGR1 TRIM22 IKZF2 SCRT2 RUNX3 RFX5 SMC3 C11orf54 CEP295 TAF1D SNORA1 SNORA25 SNORA32 SNORD6 MED17 SNORA18 SNORA8
GH11J093768 Enhancer 0.5 Ensembl 11.8 -36.2 -36201 1.8 CBFA2T2 SOX13 NFE2 SOX6 KDM1A ZEB2 SOX5 CBFA2T3 SNORA40 SNORA1 SNORA18 SNORA25 SNORA32 SNORA8 SNORD5 SNORD6 CEP295 HSALNG0086489
GH11J093796 Promoter 0.6 EPDnew 10.6 -63.2 -63223 0.1 RFX1 NCOR1 EMSY RF01210-070 RF00015-012 MED17 C11orf54 SNORA1 SNORA18 SNORA40 SNORA8 SNORD5 SNORD6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD5 gene promoter:
  • aMEF-2
  • GR
  • GR-alpha
  • MEF-2
  • MEF-2A
  • POU2F1
  • POU2F1a
  • RORalpha1

Genomic Locations for SNORD5 Gene

Genomic Locations for SNORD5 Gene
chr11:93,733,228-93,733,300
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr11:93,466,394-93,466,466
(GRCh37/hg19)
Size:
73 bases
Orientation:
Minus strand

Genomic View for SNORD5 Gene

Genes around SNORD5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD5 Gene

Proteins for SNORD5 Gene

Post-translational modifications for SNORD5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD5 Gene

Domains & Families for SNORD5 Gene

Gene Families for SNORD5 Gene

genes like me logo Genes that share domains with SNORD5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD5 Gene

Function for SNORD5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD5 Gene

Localization for SNORD5 Gene

Gene Ontology (GO) - Cellular Components for SNORD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD5 Gene

Pathways & Interactions for SNORD5 Gene

PathCards logo

SuperPathways for SNORD5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD5: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD5 Gene

Drugs & Compounds for SNORD5 Gene

No Compound Related Data Available

Transcripts for SNORD5 Gene

mRNA/cDNA for SNORD5 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD5 Gene

No ASD Table

Relevant External Links for SNORD5 Gene

GeneLoc Exon Structure for
SNORD5
ECgene alternative splicing isoforms for
SNORD5

Expression for SNORD5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD5 Gene:

SNORD5
genes like me logo Genes that share expression patterns with SNORD5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD5 Gene

Orthologs for SNORD5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD5 33
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD5 33
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD5 33
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24299 33
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD5 33
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD5 33
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD5 33
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD5 33
  • 69 (a)
OneToMany
Species where no ortholog for SNORD5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD5 Gene

ENSEMBL:
Gene Tree for SNORD5 (if available)
TreeFam:
Gene Tree for SNORD5 (if available)

Paralogs for SNORD5 Gene

No data available for Paralogs for SNORD5 Gene

Variants for SNORD5 Gene

Sequence variations from dbSNP and Humsavar for SNORD5 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000687560 -- 93,735,293(-) T/C upstream_transcript_variant
rs1000823478 -- 93,735,035(-) T/G upstream_transcript_variant
rs1001507218 -- 93,734,591(-) C/T upstream_transcript_variant
rs1004421250 -- 93,732,729(-) T/C/G downstream_transcript_variant
rs1004561459 -- 93,734,507(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD5 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Additional Variant Information for SNORD5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD5 Gene

Disorders for SNORD5 Gene

Additional Disease Information for SNORD5

No disorders were found for SNORD5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD5 Gene

Publications for SNORD5 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 2 3 56
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORD5 Gene

Sources for SNORD5 Gene