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Aliases for SNORD4B Gene

Subcategory (RNA class) for SNORD4B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD4B Gene

  • Small Nucleolar RNA, C/D Box 4B 2 3 5
  • RNA, U101B Small Nucleolar 2 3
  • U101B Small Nucleolar RNA 3
  • Z17B Small Nucleolar RNA 3
  • U101B SnoRNA 3
  • Z17B SnoRNA 3
  • RNU101B 3
  • Z17B 3

External Ids for SNORD4B Gene

ORGUL Members for SNORD4B Gene

Previous HGNC Symbols for SNORD4B Gene

  • RNU101B

Previous GeneCards Identifiers for SNORD4B Gene

  • GC17P024094
  • GC17P024099
  • GC17P024103
  • GC17P024107
  • GC17P024111
  • GC17P024115
  • GC17P024119
  • GC17P024123
  • GC17P027051
  • GC17P023260
  • GC17P027052
  • GC17P027056
  • GC17P027066
  • GC17P027083
  • GC17P028724
  • GC17P028728
  • GC17P028729
  • GC17P028731
  • GC17P028733
  • GC17P028735
  • GC17P028737

Summaries for SNORD4B Gene

GeneCards Summary for SNORD4B Gene

SNORD4B (Small Nucleolar RNA, C/D Box 4B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD4B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD4B Gene

Genomics for SNORD4B Gene

GeneHancer (GH) Regulatory Elements for SNORD4B Gene

Promoters and enhancers for SNORD4B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I028715 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.8 -757 14.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ENSG00000264577 RPL23A RAB34 NEK8 GC17P028741 GC17P028746 GC17P028748 GC17P028753 PIR32969 SNORD42A
GH17I028807 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 +86.8 86758 6.8 HDGF PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 FAM222B TRAF4 LOC101927018 ERAL1 FLOT2 DHRS13 NEK8 TLCD1 SNORD42A SNORD4B
GH17I028660 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 -61.3 -61256 3.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SUPT6H SDF2 PROCA1 ENSG00000264044 SNORD42A SNORD4B SGK494 SPAG5-AS1 NEK8 TLCD1
GH17I028854 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.7 +131.4 131377 1.7 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 FAM222B ERAL1 FLOT2 DHRS13 SNORD42A SNORD4A SNORD4B PROCA1
GH17I028863 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +141.7 141655 3.3 HDGF SMAD1 ARNT ARID4B IRF4 ZNF766 CBX5 JUNB REST ZNF592 DHRS13 RPL23A PROCA1 NUFIP2 SUPT6H PHF12 ENSG00000264577 ENSG00000265908 FLOT2 TLCD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD4B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD4B gene promoter:

Genomic Locations for SNORD4B Gene

Genomic Locations for SNORD4B Gene
chr17:28,723,681-28,723,754
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr17:27,050,699-27,050,772
(GRCh37/hg19)

Genomic View for SNORD4B Gene

Genes around SNORD4B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD4B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD4B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD4B Gene

Proteins for SNORD4B Gene

Post-translational modifications for SNORD4B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD4B Gene

Domains & Families for SNORD4B Gene

Gene Families for SNORD4B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD4B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD4B Gene

Function for SNORD4B Gene

Phenotypes From GWAS Catalog for SNORD4B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD4B Gene

Localization for SNORD4B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD4B Gene

Pathways & Interactions for SNORD4B Gene

SuperPathways for SNORD4B Gene

No Data Available

Interacting Proteins for SNORD4B Gene

Gene Ontology (GO) - Biological Process for SNORD4B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD4B Gene

Drugs & Compounds for SNORD4B Gene

No Compound Related Data Available

Transcripts for SNORD4B Gene

mRNA/cDNA for SNORD4B Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD4B Gene

No ASD Table

Relevant External Links for SNORD4B Gene

GeneLoc Exon Structure for
SNORD4B
ECgene alternative splicing isoforms for
SNORD4B

Expression for SNORD4B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD4B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD4B Gene:

SNORD4B
genes like me logo Genes that share expression patterns with SNORD4B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD4B Gene

Orthologs for SNORD4B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD4B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoZ17 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoZ17 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoZ17 34
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia snoZ17 34
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves snoZ17 34
  • 70 (a)
OneToMany
Species where no ortholog for SNORD4B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD4B Gene

ENSEMBL:
Gene Tree for SNORD4B (if available)
TreeFam:
Gene Tree for SNORD4B (if available)

Paralogs for SNORD4B Gene

No data available for Paralogs for SNORD4B Gene

Variants for SNORD4B Gene

Sequence variations from dbSNP and Humsavar for SNORD4B Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000340537 -- 28,723,984(+) C/G downstream_transcript_variant
rs1000673498 -- 28,722,930(+) G/C upstream_transcript_variant
rs1001178674 -- 28,721,774(+) TCTTTCTT/TCTT upstream_transcript_variant
rs1003818876 -- 28,722,561(+) C/G upstream_transcript_variant
rs1007548977 -- 28,722,090(+) AAAAAAAA/AAAAAAAAA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD4B Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv960457 CNV duplication 23825009

Additional Variant Information for SNORD4B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD4B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD4B Gene

Disorders for SNORD4B Gene

Additional Disease Information for SNORD4B

No disorders were found for SNORD4B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD4B Gene

Publications for SNORD4B Gene

  1. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W … Lennon G (Genomics 1997) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD4B Gene

Sources for SNORD4B Gene

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