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Aliases for SNORD4A Gene

Subcategory (RNA class) for SNORD4A Gene


Quality Score for this RNA gene is


Aliases for SNORD4A Gene

  • Small Nucleolar RNA, C/D Box 4A 2 3 5
  • RNA, U101A Small Nucleolar 2 3
  • U101A Small Nucleolar RNA 3
  • Z17A Small Nucleolar RNA 3
  • U101A SnoRNA 3
  • Z17A SnoRNA 3
  • Mgh18S-121 3
  • RNU101A 3
  • Z17A 3

External Ids for SNORD4A Gene

ORGUL Members for SNORD4A Gene

Previous HGNC Symbols for SNORD4A Gene

  • RNU101A

Previous GeneCards Identifiers for SNORD4A Gene

  • GC17P024092
  • GC17P024097
  • GC17P024101
  • GC17P024105
  • GC17P024109
  • GC17P024113
  • GC17P024117
  • GC17P024121
  • GC17P027049

Summaries for SNORD4A Gene

GeneCards Summary for SNORD4A Gene

SNORD4A (Small Nucleolar RNA, C/D Box 4A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD4A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD4A Gene

Genomics for SNORD4A Gene

GeneHancer (GH) Regulatory Elements for SNORD4A Gene

Promoters and enhancers for SNORD4A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J028715 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.3 342 14.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ENSG00000264577 RAB34 RPL23A NEK8 GC17P028744 GC17P028748 GC17P028753 GC17P028756 SNORD42A SNORD4A
GH17J028854 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.7 +132.5 132476 1.7 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ERAL1 FAM222B FLOT2 DHRS13 SNORD42A SNORD4A SNORD4B PROCA1
GH17J028807 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +87.9 87857 6.8 HDGF PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 SUPT6H TRAF4 LOC101927018 ENSG00000264577 ENSG00000265205 NUFIP2 ENSG00000265908 ERAL1 FAM222B PIGS
GH17J028923 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +203.5 203481 4.8 PKNOX1 ATF1 FEZF1 IRF4 ZNF766 FOS ATF7 RUNX3 JUNB NCOA1 LOC101927018 PHF12 FLOT2 DHRS13 ERAL1 FAM222B SEZ6 SUPT6H NUFIP2 SNORD42A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD4A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD4A gene promoter:
  • c-Jun
  • ATF-2
  • Tal-1beta
  • E47
  • FOXI1
  • HFH-3
  • PPAR-gamma1
  • PPAR-gamma2
  • CRE-BP1

Genomic Locations for SNORD4A Gene

Genomic Locations for SNORD4A Gene
72 bases
Plus strand
72 bases
Plus strand

Genomic View for SNORD4A Gene

Genes around SNORD4A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD4A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD4A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD4A Gene

Proteins for SNORD4A Gene

Post-translational modifications for SNORD4A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD4A Gene

Domains & Families for SNORD4A Gene

Gene Families for SNORD4A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD4A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD4A Gene

Function for SNORD4A Gene

Phenotypes From GWAS Catalog for SNORD4A Gene

Phenotypes for SNORD4A Gene

genes like me logo Genes that share phenotypes with SNORD4A: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD4A Gene

Localization for SNORD4A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD4A Gene

Pathways & Interactions for SNORD4A Gene

SuperPathways for SNORD4A Gene

No Data Available

Interacting Proteins for SNORD4A Gene

Gene Ontology (GO) - Biological Process for SNORD4A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD4A Gene

Drugs & Compounds for SNORD4A Gene

No Compound Related Data Available

Transcripts for SNORD4A Gene

mRNA/cDNA for SNORD4A Gene

(3749) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD4A Gene

No ASD Table

Relevant External Links for SNORD4A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD4A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD4A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD4A Gene:

genes like me logo Genes that share expression patterns with SNORD4A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD4A Gene

Orthologs for SNORD4A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD4A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoZ17 34
  • 100 (a)
(Canis familiaris)
Mammalia snoZ17 34
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia snoZ17 34
  • 84 (a)
(Bos Taurus)
Mammalia snoZ17 34
  • 83 (a)
(Monodelphis domestica)
Mammalia snoZ17 34
  • 82 (a)
(Mus musculus)
Mammalia Snord4a 34
  • 76 (a)
(Gallus gallus)
Aves snoZ17 34
  • 63 (a)
Species where no ortholog for SNORD4A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD4A Gene

Gene Tree for SNORD4A (if available)
Gene Tree for SNORD4A (if available)

Paralogs for SNORD4A Gene

No data available for Paralogs for SNORD4A Gene

Variants for SNORD4A Gene

Sequence variations from dbSNP and Humsavar for SNORD4A Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000673498 -- 28,722,930(+) G/C downstream_transcript_variant
rs1001178674 -- 28,721,774(+) TCTTTCTT/TCTT upstream_transcript_variant
rs1001859064 -- 28,721,564(+) T/A upstream_transcript_variant
rs1002678307 -- 28,720,617(+) C/A upstream_transcript_variant
rs1002828875 -- 28,721,114(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD4A Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv960457 CNV duplication 23825009

Additional Variant Information for SNORD4A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD4A Gene

Disorders for SNORD4A Gene

Additional Disease Information for SNORD4A

No disorders were found for SNORD4A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD4A Gene

Publications for SNORD4A Gene

  1. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W … Lennon G (Genomics 1997) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD4A Gene

Sources for SNORD4A Gene

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