Aliases for SNORD49B Gene

Subcategory (RNA class) for SNORD49B Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORD49B Gene

  • Small Nucleolar RNA, C/D Box 49B 2 3 5
  • SNORD49B 2 174
  • RF00277 172
  • U49B 3

External Ids for SNORD49B Gene

Previous GeneCards Identifiers for SNORD49B Gene

  • GC17P016292
  • GC17P016296
  • GC17P016342
  • GC17P016210

Summaries for SNORD49B Gene

GeneCards Summary for SNORD49B Gene

SNORD49B (Small Nucleolar RNA, C/D Box 49B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD49B Gene

  • Small nucleolar RNA SNORD49

Additional gene information for SNORD49B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD49B Gene

Genomics for SNORD49B Gene

GeneHancer (GH) Regulatory Elements for SNORD49B Gene

Promoters and enhancers for SNORD49B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.7 1703 7.2 EP300 FOXK2 ZNF217 SIN3A NRF1 TCF12 POLR2G USF1 SP1 NCOR1 ENSG00000266651 SNORD49A SNORD49B SNORD65 piR-31623 piR-42162 piR-61388 NCOR1 ENSG00000266538 PIGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD49B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD49B gene promoter:
  • AML1a
  • AP-4
  • Evi-1
  • FOXJ2
  • FOXJ2 (long isoform)
  • MyoD
  • p300
  • POU6F1 (c2)

Genomic Locations for SNORD49B Gene

Genomic Locations for SNORD49B Gene
chr17:16,439,505-16,439,576
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr17:16,342,823-16,342,870
(GRCh37/hg19)
Size:
48 bases
Orientation:
Plus strand

Genomic View for SNORD49B Gene

Genes around SNORD49B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD49B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD49B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD49B Gene

Proteins for SNORD49B Gene

Post-translational modifications for SNORD49B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD49B Gene

Domains & Families for SNORD49B Gene

Gene Families for SNORD49B Gene

genes like me logo Genes that share domains with SNORD49B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD49B Gene

Function for SNORD49B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD49B Gene

Localization for SNORD49B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD49B Gene

Pathways & Interactions for SNORD49B Gene

PathCards logo

SuperPathways for SNORD49B Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD49B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD49B Gene

Drugs & Compounds for SNORD49B Gene

No Compound Related Data Available

Transcripts for SNORD49B Gene

mRNA/cDNA for SNORD49B Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD49B Gene

No ASD Table

Relevant External Links for SNORD49B Gene

GeneLoc Exon Structure for
SNORD49B

Expression for SNORD49B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD49B

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD49B Gene

Orthologs for SNORD49B Gene

Evolution for SNORD49B Gene

ENSEMBL:
Gene Tree for SNORD49B (if available)
TreeFam:
Gene Tree for SNORD49B (if available)

No data available for Orthologs for SNORD49B Gene

Paralogs for SNORD49B Gene

No data available for Paralogs for SNORD49B Gene

Variants for SNORD49B Gene

Additional dbSNP identifiers (rs#s) for SNORD49B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD49B Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Additional Variant Information for SNORD49B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD49B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD49B Gene

Disorders for SNORD49B Gene

Additional Disease Information for SNORD49B

No disorders were found for SNORD49B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD49B Gene

Publications for SNORD49B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD49B Gene

Sources for SNORD49B Gene