Aliases for SNORD49A Gene

Subcategory (RNA class) for SNORD49A Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORD49A Gene

  • Small Nucleolar RNA, C/D Box 49A 2 3 5
  • RNA, U49 Small Nuclear 2 3
  • SNORD49A 2 174
  • RF00277 172
  • RNU49 3
  • U49A 3
  • U49 3

External Ids for SNORD49A Gene

Previous HGNC Symbols for SNORD49A Gene

  • RNU49

Previous GeneCards Identifiers for SNORD49A Gene

  • GC17P016293
  • GC17P016298
  • GC17P016343
  • GC17P016211

Summaries for SNORD49A Gene

GeneCards Summary for SNORD49A Gene

SNORD49A (Small Nucleolar RNA, C/D Box 49A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD49A Gene

  • Small nucleolar RNA SNORD49

Additional gene information for SNORD49A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD49A Gene

Genomics for SNORD49A Gene

GeneHancer (GH) Regulatory Elements for SNORD49A Gene

Promoters and enhancers for SNORD49A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.2 1172 7.2 EP300 FOXK2 ZNF217 SIN3A NRF1 TCF12 POLR2G USF1 SP1 NCOR1 ENSG00000266651 SNORD49A SNORD49B SNORD65 piR-31623 piR-42162 piR-61388 NCOR1 ENSG00000266538 PIGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD49A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD49A gene promoter:
  • AML1a
  • AP-4
  • Evi-1
  • FOXJ2
  • FOXJ2 (long isoform)
  • MyoD
  • p300
  • POU6F1 (c2)

Genomic Locations for SNORD49A Gene

Genomic Locations for SNORD49A Gene
chr17:16,440,036-16,440,106
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand
chr17:16,342,136-16,381,992
(GRCh37/hg19)
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for SNORD49A Gene

Genes around SNORD49A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD49A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD49A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD49A Gene

Proteins for SNORD49A Gene

Post-translational modifications for SNORD49A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD49A Gene

Domains & Families for SNORD49A Gene

Gene Families for SNORD49A Gene

genes like me logo Genes that share domains with SNORD49A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD49A Gene

Function for SNORD49A Gene

Phenotypes From GWAS Catalog for SNORD49A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD49A Gene

Localization for SNORD49A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD49A gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD49A Gene

Pathways & Interactions for SNORD49A Gene

PathCards logo

SuperPathways for SNORD49A Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD49A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD49A Gene

Drugs & Compounds for SNORD49A Gene

No Compound Related Data Available

Transcripts for SNORD49A Gene

mRNA/cDNA for SNORD49A Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD49A Gene

No ASD Table

Relevant External Links for SNORD49A Gene

GeneLoc Exon Structure for
SNORD49A

Expression for SNORD49A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD49A

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD49A Gene

Orthologs for SNORD49A Gene

Evolution for SNORD49A Gene

ENSEMBL:
Gene Tree for SNORD49A (if available)
TreeFam:
Gene Tree for SNORD49A (if available)

No data available for Orthologs for SNORD49A Gene

Paralogs for SNORD49A Gene

No data available for Paralogs for SNORD49A Gene

Variants for SNORD49A Gene

Additional dbSNP identifiers (rs#s) for SNORD49A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD49A Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Additional Variant Information for SNORD49A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD49A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD49A Gene

Disorders for SNORD49A Gene

Additional Disease Information for SNORD49A

No disorders were found for SNORD49A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD49A Gene

Publications for SNORD49A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD49A Gene

Sources for SNORD49A Gene