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Aliases for SNORD49A Gene

Subcategory (RNA class) for SNORD49A Gene


Quality Score for this RNA gene is


Aliases for SNORD49A Gene

  • Small Nucleolar RNA, C/D Box 49A 2 3 5
  • RNA, U49 Small Nuclear 2 3
  • RNU49 3
  • U49A 3
  • U49 3

External Ids for SNORD49A Gene

Previous HGNC Symbols for SNORD49A Gene

  • RNU49

Previous GeneCards Identifiers for SNORD49A Gene

  • GC17P016293
  • GC17P016298
  • GC17P016343
  • GC17P016211

Summaries for SNORD49A Gene

GeneCards Summary for SNORD49A Gene

SNORD49A (Small Nucleolar RNA, C/D Box 49A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD49A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD49A Gene

Genomics for SNORD49A Gene

GeneHancer (GH) Regulatory Elements for SNORD49A Gene

Promoters and enhancers for SNORD49A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J016438 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 650.7 +1.4 1382 6.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC GC17P016459 GC17P016461 GC17P016462 GC17P016463 GC17P016464 PIR32622 SNORD49A SNORD49B SNORD65 PIR35161
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD49A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD49A gene promoter:
  • FOXJ2 (long isoform)
  • FOXJ2
  • MyoD
  • Evi-1
  • AP-4
  • POU6F1 (c2)
  • AML1a
  • p300

Genomic Locations for SNORD49A Gene

Genomic Locations for SNORD49A Gene
71 bases
Plus strand
39,857 bases
Plus strand

Genomic View for SNORD49A Gene

Genes around SNORD49A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD49A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD49A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD49A Gene

Proteins for SNORD49A Gene

Post-translational modifications for SNORD49A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD49A Gene

Domains & Families for SNORD49A Gene

Gene Families for SNORD49A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD49A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD49A Gene

Function for SNORD49A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD49A Gene

Localization for SNORD49A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD49A Gene

Pathways & Interactions for SNORD49A Gene

SuperPathways for SNORD49A Gene

No Data Available

Interacting Proteins for SNORD49A Gene

Gene Ontology (GO) - Biological Process for SNORD49A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD49A Gene

Drugs & Compounds for SNORD49A Gene

No Compound Related Data Available

Transcripts for SNORD49A Gene

mRNA/cDNA for SNORD49A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD49A Gene

No ASD Table

Relevant External Links for SNORD49A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD49A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD49A Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD49A Gene

Orthologs for SNORD49A Gene

Evolution for SNORD49A Gene

Gene Tree for SNORD49A (if available)
Gene Tree for SNORD49A (if available)

No data available for Orthologs for SNORD49A Gene

Paralogs for SNORD49A Gene

No data available for Paralogs for SNORD49A Gene

Variants for SNORD49A Gene

Sequence variations from dbSNP and Humsavar for SNORD49A Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001416138 -- 16,439,012(+) G/T upstream_transcript_variant
rs1001938282 -- 16,440,339(+) T/C downstream_transcript_variant
rs1002456121 -- 16,440,499(+) T/C downstream_transcript_variant
rs1002613980 -- 16,438,309(+) C/T upstream_transcript_variant
rs1003345672 -- 16,439,124(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD49A Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958

Additional Variant Information for SNORD49A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD49A Gene

Disorders for SNORD49A Gene

Additional Disease Information for SNORD49A

No disorders were found for SNORD49A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD49A Gene

Publications for SNORD49A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD49A Gene

Sources for SNORD49A Gene

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