Aliases for SNORD48 Gene

Subcategory (RNA class) for SNORD48 Gene


Number of RNA Genes sources:

3 / 17

Aliases for SNORD48 Gene

  • Small Nucleolar RNA, C/D Box 48 2 3 5
  • RNA, U48 Small Nuclear 2 3
  • SNORD48 5 170
  • U48 2 3
  • SNODB111 177
  • RF00282 168
  • RNU48 3

External Ids for SNORD48 Gene

Previous HGNC Symbols for SNORD48 Gene

  • RNU48

Previous GeneCards Identifiers for SNORD48 Gene

  • GC06P031913
  • GC06P031915
  • GC06P031803
  • GC06P031589
  • GC06P031837
  • GC06P031840
  • GC06P032337
  • GC06P032522
  • GC06P032630
  • GC06P033431
  • GC06P031845
  • GC06P031898
  • GC06P031943
  • GC06P031970
  • GC06P032036
  • GC06P032212
  • GC06P032243

Summaries for SNORD48 Gene

GeneCards Summary for SNORD48 Gene

SNORD48 (Small Nucleolar RNA, C/D Box 48) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD48 Gene

  • Small nucleolar RNA SNORD48

Additional gene information for SNORD48 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD48 Gene

Genomics for SNORD48 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD48 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031813 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.0 -9031 26.3 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 SNHG32 HSPA1B HSPA1A HSPA1L RF00495 ATF6B DDX39B LY6G5B LSM2 CSNK2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD48 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD48 gene promoter:
  • ATF
  • CP2
  • Max1
  • NF-kappaB
  • NF-kappaB1
  • PPAR-alpha
  • STAT3

Genomic Locations for SNORD48 Gene

Genomic Locations for SNORD48 Gene
64 bases
Plus strand
64 bases
Plus strand

Genomic View for SNORD48 Gene

Genes around SNORD48 on UCSC Golden Path with GeneCards custom track
SNORD48 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD48 Gene

Proteins for SNORD48 Gene

Post-translational modifications for SNORD48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD48 Gene

Domains & Families for SNORD48 Gene

Gene Families for SNORD48 Gene

genes like me logo Genes that share domains with SNORD48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD48 Gene

Function for SNORD48 Gene

Phenotypes From GWAS Catalog for SNORD48 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD48 Gene

Localization for SNORD48 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD48 gene
Compartment Confidence
plasma membrane 2
extracellular 2
cytoskeleton 2
nucleus 2
mitochondrion 1
endoplasmic reticulum 1
endosome 1
cytosol 1
lysosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SNORD48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD48: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD48 Gene

Pathways & Interactions for SNORD48 Gene

PathCards logo

SuperPathways for SNORD48 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD48 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD48: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD48 Gene

Drugs & Compounds for SNORD48 Gene

No Compound Related Data Available

Transcripts for SNORD48 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD48 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000712944_9606 snoRNA 64 4

Ensembl: ENST00000364953 (view in UCSC) ,

Rfam: RF00282,

snoDB: SNODB111,

snOPY: Homo_sapiens300528,

SNORD48 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SNORD48 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD48 Gene

No ASD Table

Relevant External Links for SNORD48 Gene

GeneLoc Exon Structure for

Expression for SNORD48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD48 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD48

Evidence on tissue expression from TISSUES for SNORD48 Gene

  • Blood(2.1)
genes like me logo Genes that share expression patterns with SNORD48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD48 Gene

Orthologs for SNORD48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD48 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD48 31
  • 98 (a)
(Canis familiaris)
Mammalia SNORD48 31 31
  • 90 (a)
(Bos Taurus)
Mammalia SNORD48 31
  • 89 (a)
(Mus musculus)
Mammalia Gm25744 31
  • 84 (a)
(Monodelphis domestica)
Mammalia SNORD48 31
  • 79 (a)
Species where no ortholog for SNORD48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD48 Gene

Gene Tree for SNORD48 (if available)
Gene Tree for SNORD48 (if available)

Paralogs for SNORD48 Gene

No data available for Paralogs for SNORD48 Gene

Variants for SNORD48 Gene

Additional dbSNP identifiers (rs#s) for SNORD48 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD48 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10461n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
esv3608569 CNV loss 21293372
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259

Additional Variant Information for SNORD48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD48 Gene

Disorders for SNORD48 Gene

Additional Disease Information for SNORD48

No disorders were found for SNORD48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD48 Gene

Publications for SNORD48 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3
  2. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3
  3. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD48 Gene

Sources for SNORD48 Gene