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SNORD48 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 48

GCID:
GC06P032036
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORD48 Gene

Subcategory (RNA class) for SNORD48 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD48 Gene

  • Small Nucleolar RNA, C/D Box 48 2 3 5
  • RNA, U48 Small Nuclear 2 3
  • RNU48 3
  • U48 3

External Ids for SNORD48 Gene

Previous HGNC Symbols for SNORD48 Gene

  • RNU48

Previous GeneCards Identifiers for SNORD48 Gene

  • GC06P031913
  • GC06P031915
  • GC06P031803
  • GC06P031589
  • GC06P031837
  • GC06P031840
  • GC06P031845
  • GC06P031898
  • GC06P031943
  • GC06P031970

Summaries for SNORD48 Gene

GeneCards Summary for SNORD48 Gene

SNORD48 (Small Nucleolar RNA, C/D Box 48) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD48 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD48 Gene

Genomics for SNORD48 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD48 Gene

Promoters and enhancers for SNORD48 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06I031813 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.4 -9387 25.6 CLOCK ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 C6orf48 HSPA1B HSPA1A HSPA1L GC06P032039 ATF6B DDX39B LY6G5B LSM2 BAG6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD48 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD48 gene promoter:

Genomic Locations for SNORD48 Gene

Genomic Locations for SNORD48 Gene
chr6:31,835,263-31,835,326
(GRCh38/hg38)
Size:
64 bases
Orientation:
Plus strand
chr6:31,803,040-31,803,103
(GRCh37/hg19)

Genomic View for SNORD48 Gene

Genes around SNORD48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD48 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD48 Gene

Proteins for SNORD48 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD48 Gene

Domains & Families for SNORD48 Gene

Gene Families for SNORD48 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD48: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD48 Gene

Function for SNORD48 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD48 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD48 Gene

Localization for SNORD48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD48 Gene

Pathways & Interactions for SNORD48 Gene

SuperPathways for SNORD48 Gene

PathCards logo More details on SuperPathways for SNORD48
No Data Available

Interacting Proteins for SNORD48 Gene

Gene Ontology (GO) - Biological Process for SNORD48 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD48 Gene

Drugs & Compounds for SNORD48 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD48 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD48 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD48 Gene

No ASD Table

Relevant External Links for SNORD48 Gene

GeneLoc Exon Structure for
SNORD48
ECgene alternative splicing isoforms for
SNORD48

Expression for SNORD48 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD48 Gene

mRNA expression in normal human tissues for SNORD48 Gene
mRNA expression by GTEx for SNORD48 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD48 Gene:

SNORD48
genes like me logo Genes that share expression patterns with SNORD48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD48 Gene

Orthologs for SNORD48 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD48 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD48 34
  • 98 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD48 34 34
  • 90 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia SNORD48 34
  • 89 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm25744 34
  • 84 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD48 34
  • 79 (a)
 OneToOne
Species where no ortholog for SNORD48 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD48 Gene

ENSEMBL:
Gene Tree for SNORD48 (if available)
TreeFam:
Gene Tree for SNORD48 (if available)

Paralogs for SNORD48 Gene

No data available for Paralogs for SNORD48 Gene

Variants for SNORD48 Gene

Sequence variations from dbSNP and Humsavar for SNORD48 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000185134 -- 31,835,467(+) G/C downstream_transcript_variant
rs1000189351 -- 31,834,135(+) A/T upstream_transcript_variant
rs1000512701 -- 31,834,634(+) CAC/C upstream_transcript_variant
rs1000805055 -- 31,834,883(+) G/A upstream_transcript_variant
rs1002626849 -- 31,834,746(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD48 Gene

Variant ID Type Subtype PubMed ID
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
esv3608569 CNV loss 21293372
dgv10463n54 CNV loss 21841781
dgv10461n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
dgv10403n54 CNV loss 21841781

Additional Variant Information for SNORD48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD48 Gene

Disorders for SNORD48 Gene

Additional Disease Information for SNORD48

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD48 Gene

Publications for SNORD48 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 3 58

Products for SNORD48 Gene

Sources for SNORD48 Gene

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