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SNORD48 (Small Nucleolar RNA, C/D Box 48) is an RNA Gene, and is affiliated with the snoRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH06J031813 | Promoter/Enhancer | 2.7 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | -9.0 | -9031 | 26.3 | RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 | SNHG32 HSPA1B HSPA1A HSPA1L RF00495 ATF6B DDX39B LY6G5B LSM2 CSNK2B |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005730 | nucleolus | IEA | -- |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000712944_9606 | snoRNA | 64 | 4 |
Ensembl: ENST00000364953 (view in UCSC) , Rfam: RF00282, snoDB: SNODB111, snOPY: Homo_sapiens300528, |
This gene was present in the common ancestor of mammals.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | SNORD48 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | SNORD48 31 31 |
|
OneToMany | |
Cow (Bos Taurus) |
Mammalia | SNORD48 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Gm25744 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | SNORD48 31 |
|
OneToOne |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv10403n54 | CNV | loss | 21841781 |
dgv10404n54 | CNV | loss | 21841781 |
dgv10461n54 | CNV | loss | 21841781 |
dgv10463n54 | CNV | loss | 21841781 |
esv3608569 | CNV | loss | 21293372 |
nsv1073969 | CNV | deletion | 25765185 |
nsv1112900 | CNV | deletion | 24896259 |
nsv1126749 | CNV | deletion | 24896259 |
No disorders were found for SNORD48 Gene.