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Aliases for SNORD47 Gene

Subcategory (RNA class) for SNORD47 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD47 Gene

  • Small Nucleolar RNA, C/D Box 47 2 3
  • RNA, U47 Small Nuclear 2 3
  • RNU47 3
  • U47 3

External Ids for SNORD47 Gene

Previous HGNC Symbols for SNORD47 Gene

  • RNU47

Previous GeneCards Identifiers for SNORD47 Gene

  • GC01M172109
  • GC01M172118
  • GC01M172126
  • GC01M172134
  • GC01M172143
  • GC01M172147
  • GC01M172158
  • GC01M172171
  • GC01M173836
  • GC01M173852
  • GC01M173861
  • GC01M173871
  • GC01M173881
  • GC01M173890
  • GC01M173904
  • GC01M173917
  • GC01M173933
  • GC01M173943
  • GC01M173957
  • GC01M173973
  • GC01M173981
  • GC01M173980
  • GC01M173993
  • GC01M174003
  • GC01M174017

Summaries for SNORD47 Gene

GeneCards Summary for SNORD47 Gene

SNORD47 (Small Nucleolar RNA, C/D Box 47) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD47 Gene

Genomics for SNORD47 Gene

GeneHancer (GH) Regulatory Elements for SNORD47 Gene

Promoters and enhancers for SNORD47 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.7 -2.3 -2315 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174038 GC01M174039 GC01M174041 GC01M174042 GC01M174043 GC01M174045 GC01M174046 GC01M174047
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD47 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD47 gene promoter:
  • Ik-2
  • Pax-4a
  • deltaCREB
  • CREB
  • IRF-1
  • Elk-1
  • Evi-1
  • AML1a
  • CUTL1
  • NF-kappaB

Genomic Locations for SNORD47 Gene

Genomic Locations for SNORD47 Gene
chr1:173,864,369-173,864,445
(GRCh38/hg38)
Size:
77 bases
Orientation:
Minus strand
chr1:173,833,038-173,838,020
(GRCh37/hg19)
Size:
4,983 bases
Orientation:
Minus strand

Genomic View for SNORD47 Gene

Genes around SNORD47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD47 Gene

Proteins for SNORD47 Gene

Post-translational modifications for SNORD47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD47 Gene

Domains & Families for SNORD47 Gene

Gene Families for SNORD47 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD47: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD47 Gene

Function for SNORD47 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD47 Gene

Localization for SNORD47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD47 Gene

Pathways & Interactions for SNORD47 Gene

SuperPathways for SNORD47 Gene

No Data Available

Interacting Proteins for SNORD47 Gene

Gene Ontology (GO) - Biological Process for SNORD47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD47 Gene

Drugs & Compounds for SNORD47 Gene

No Compound Related Data Available

Transcripts for SNORD47 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD47 Gene

No ASD Table

Relevant External Links for SNORD47 Gene

GeneLoc Exon Structure for
SNORD47
ECgene alternative splicing isoforms for
SNORD47

Expression for SNORD47 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD47 Gene:

SNORD47
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD47 Gene

Orthologs for SNORD47 Gene

No data available for Orthologs and Evolution for SNORD47 Gene

Paralogs for SNORD47 Gene

No data available for Paralogs for SNORD47 Gene

Variants for SNORD47 Gene

Sequence variations from dbSNP and Humsavar for SNORD47 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001615710 -- 173,864,655(-) C/A upstream_transcript_variant
rs1002607397 -- 173,866,052(-) A/C upstream_transcript_variant
rs1002617054 -- 173,865,916(-) A/G upstream_transcript_variant
rs1002649601 -- 173,865,510(-) C/T upstream_transcript_variant
rs1003069702 -- 173,865,815(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD47 Gene

Variant ID Type Subtype PubMed ID
esv2758978 CNV loss 17122850
nsv831926 CNV gain+loss 17160897

Additional Variant Information for SNORD47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD47 Gene

Disorders for SNORD47 Gene

Additional Disease Information for SNORD47

No disorders were found for SNORD47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD47 Gene

Publications for SNORD47 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. SNORD47, a box C/D snoRNA, suppresses tumorigenesis in glioblastoma. (PMID: 28410200) Xu B … Zhu XG (Oncotarget 2017) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD47 Gene

Sources for SNORD47 Gene

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