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Aliases for SNORD44 Gene

Subcategory (RNA class) for SNORD44 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD44 Gene

  • Small Nucleolar RNA, C/D Box 44 2 3
  • RNA, U44 Small Nuclear 2 3
  • RNU44 3
  • U44 3

External Ids for SNORD44 Gene

ORGUL Members for SNORD44 Gene

Previous HGNC Symbols for SNORD44 Gene

  • RNU44

Previous GeneCards Identifiers for SNORD44 Gene

  • GC01M172110
  • GC01M172119
  • GC01M172127
  • GC01M172135
  • GC01M172144
  • GC01M172148
  • GC01M172159
  • GC01M172172
  • GC01M173839
  • GC01M173846
  • GC01M173853
  • GC01M173863
  • GC01M173873
  • GC01M173882
  • GC01M173891
  • GC01M173906
  • GC01M173918
  • GC01M173936
  • GC01M173946
  • GC01M173960
  • GC01M173976
  • GC01M173984
  • GC01M173988
  • GC01M173996
  • GC01M174006
  • GC01M174020

Summaries for SNORD44 Gene

GeneCards Summary for SNORD44 Gene

SNORD44 (Small Nucleolar RNA, C/D Box 44) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD44 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD44 Gene

Genomics for SNORD44 Gene

GeneHancer (GH) Regulatory Elements for SNORD44 Gene

Promoters and enhancers for SNORD44 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J173861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.7 -732 10.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZBTB37 CENPL GC01M174042 GC01M174043 SNORD80 SNORD79 SNORD78 SNORD77 SNORD76 SNORD75
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD44 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD44 gene promoter:
  • Ik-2
  • LCR-F1
  • CREB
  • IRF-1
  • deltaCREB
  • Pax-4a
  • AP-1
  • c-Fos
  • c-Jun
  • FosB

Genomic Locations for SNORD44 Gene

Genomic Locations for SNORD44 Gene
chr1:173,865,968-173,866,028
(GRCh38/hg38)
Size:
61 bases
Orientation:
Minus strand
chr1:173,835,106-173,835,166
(GRCh37/hg19)
Size:
61 bases
Orientation:
Minus strand

Genomic View for SNORD44 Gene

Genes around SNORD44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD44 Gene

Proteins for SNORD44 Gene

Post-translational modifications for SNORD44 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD44 Gene

Domains & Families for SNORD44 Gene

Gene Families for SNORD44 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD44: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD44 Gene

Function for SNORD44 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD44 Gene

Localization for SNORD44 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD44 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD44 Gene

Pathways & Interactions for SNORD44 Gene

SuperPathways for SNORD44 Gene

No Data Available

Interacting Proteins for SNORD44 Gene

Gene Ontology (GO) - Biological Process for SNORD44 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD44 Gene

Drugs & Compounds for SNORD44 Gene

No Compound Related Data Available

Transcripts for SNORD44 Gene

mRNA/cDNA for SNORD44 Gene

(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD44 Gene

No ASD Table

Relevant External Links for SNORD44 Gene

GeneLoc Exon Structure for
SNORD44
ECgene alternative splicing isoforms for
SNORD44

Expression for SNORD44 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD44 Gene:

SNORD44
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD44 Gene

Orthologs for SNORD44 Gene

No data available for Orthologs and Evolution for SNORD44 Gene

Paralogs for SNORD44 Gene

No data available for Paralogs for SNORD44 Gene

Variants for SNORD44 Gene

Sequence variations from dbSNP and Humsavar for SNORD44 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000056001 -- 173,867,389(-) G/A upstream_transcript_variant
rs1000127752 -- 173,867,669(-) A/G upstream_transcript_variant
rs1000607514 -- 173,867,847(-) G/A upstream_transcript_variant
rs1000640330 -- 173,867,622(-) A/G upstream_transcript_variant
rs1001991899 -- 173,867,957(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD44 Gene

Variant ID Type Subtype PubMed ID
nsv831926 CNV gain+loss 17160897
esv2758978 CNV loss 17122850

Additional Variant Information for SNORD44 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD44

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD44 Gene

Disorders for SNORD44 Gene

Additional Disease Information for SNORD44

No disorders were found for SNORD44 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD44 Gene

Publications for SNORD44 Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD44 Gene

Sources for SNORD44 Gene

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