Aliases for SNORD42A Gene

Subcategory (RNA class) for SNORD42A Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORD42A Gene

  • Small Nucleolar RNA, C/D Box 42A 2 3 5
  • RNA, U42A Small Nuclear 2 3
  • SNORD42A 2 176
  • U42 Small Nuclear RNA 3
  • U42A SnoRNA 3
  • RF00150 174
  • RNU42A 3
  • U42A 3
  • U42 3

External Ids for SNORD42A Gene

Previous HGNC Symbols for SNORD42A Gene

  • RNU42A

Previous GeneCards Identifiers for SNORD42A Gene

  • GC17P024093
  • GC17P024098
  • GC17P024102
  • GC17P024106
  • GC17P024110
  • GC17P024114
  • GC17P024118
  • GC17P024122
  • GC17P027050
  • GC17P023259

Summaries for SNORD42A Gene

GeneCards Summary for SNORD42A Gene

SNORD42A (Small Nucleolar RNA, C/D Box 42A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD42A Gene

  • Small nucleolar RNA SNORD42

Additional gene information for SNORD42A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD42A Gene

Genomics for SNORD42A Gene

GeneHancer (GH) Regulatory Elements for SNORD42A Gene

Promoters and enhancers for SNORD42A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD42A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD42A gene promoter:
  • ATF-2
  • c-Jun
  • CRE-BP1
  • E47
  • FOXI1
  • HFH-3
  • PPAR-gamma1
  • PPAR-gamma2
  • Tal-1beta

Genomic Locations for SNORD42A Gene

Genomic Locations for SNORD42A Gene
chr17:28,723,429-28,723,492
(GRCh38/hg38)
Size:
64 bases
Orientation:
Plus strand
chr17:27,050,447-27,050,510
(GRCh37/hg19)
Size:
64 bases
Orientation:
Plus strand

Genomic View for SNORD42A Gene

Genes around SNORD42A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD42A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD42A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD42A Gene

Proteins for SNORD42A Gene

Post-translational modifications for SNORD42A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD42A Gene

Domains & Families for SNORD42A Gene

Gene Families for SNORD42A Gene

genes like me logo Genes that share domains with SNORD42A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD42A Gene

Function for SNORD42A Gene

Phenotypes From GWAS Catalog for SNORD42A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD42A Gene

Localization for SNORD42A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD42A gene
Compartment Confidence
mitochondrion 1

Gene Ontology (GO) - Cellular Components for SNORD42A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD42A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD42A Gene

Pathways & Interactions for SNORD42A Gene

PathCards logo

SuperPathways for SNORD42A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD42A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD42A: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD42A Gene

Drugs & Compounds for SNORD42A Gene

No Compound Related Data Available

Transcripts for SNORD42A Gene

mRNA/cDNA for SNORD42A Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3749) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD42A Gene

No ASD Table

Relevant External Links for SNORD42A Gene

GeneLoc Exon Structure for
SNORD42A
ECgene alternative splicing isoforms for
SNORD42A

Expression for SNORD42A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD42A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD42A Gene:

SNORD42A
genes like me logo Genes that share expression patterns with SNORD42A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD42A Gene

Orthologs for SNORD42A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD42A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD42 33
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord42a 33
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD42 33
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD42 33
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD42 33
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD42 33
  • 55 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD42 33
  • 54 (a)
OneToMany
Species where no ortholog for SNORD42A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD42A Gene

ENSEMBL:
Gene Tree for SNORD42A (if available)
TreeFam:
Gene Tree for SNORD42A (if available)

Paralogs for SNORD42A Gene

No data available for Paralogs for SNORD42A Gene

Variants for SNORD42A Gene

Sequence variations from dbSNP and Humsavar for SNORD42A Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000340537 -- 28,723,984(+) C/G downstream_transcript_variant
rs1000673498 -- 28,722,930(+) G/C upstream_transcript_variant
rs1001178674 -- 28,721,774(+) TCTTTCTT/TCTT upstream_transcript_variant
rs1001859064 -- 28,721,564(+) T/A upstream_transcript_variant
rs1003818876 -- 28,722,561(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD42A Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv960457 CNV duplication 23825009

Additional Variant Information for SNORD42A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD42A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD42A Gene

Disorders for SNORD42A Gene

Additional Disease Information for SNORD42A

No disorders were found for SNORD42A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD42A Gene

Publications for SNORD42A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 56
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
  3. Cloning, sequencing, gene organization, and localization of the human ribosomal protein RPL23A gene. (PMID: 9417910) Fan W … Lennon G (Genomics 1997) 3 56

Products for SNORD42A Gene

Sources for SNORD42A Gene