Aliases for SNORD3J Gene

Data sources for SNORD3J Gene:

Subcategory (RNA class) for SNORD3J Gene

snoRNA

Aliases for SNORD3J Gene

External Ids for SNORD3J Gene

Previous GeneCards Identifiers for SNORD3J Gene

  • GC00U936720
  • GC10U902695

Summaries for SNORD3J Gene

GeneCards Summary for SNORD3J Gene

SNORD3J (Small Nucleolar RNA, C/D Box 3J) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD3J Gene

Additional gene information for SNORD3J Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD3J Gene

Genomics for SNORD3J Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD3J Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J043416 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.1 -2103 6.1 TBP ZBTB10 MXD4 CEBPA MNT IKZF1 SMAD5 HES1 ZFP64 MBD2 HSALNG0077548 ZNF32-AS2 BMS1 EIF3LP2 ENSG00000230555 ZNF33B ZNF239 ENSG00000259869 HNRNPF CSGALNACT2
GH10J043413 Enhancer 0.3 Ensembl 0.7 +3.8 3839 0.8 ZBTB33 ENSG00000230555 HNRNPF SNORD3J lnc-ZNF487-4 ZNF487 lnc-HNRNPF-1
GH10J043412 Enhancer 0.2 Ensembl 0.7 +4.8 4839 0.4 HNRNPF SNORD3J lnc-ZNF487-4 ZNF487 lnc-HNRNPF-1 ENSG00000230555
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD3J on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORD3J Gene

Latest Assembly
chr10:43,417,249-43,417,440
(GRCh38/hg38)
Size:
192 bases
Orientation:
Minus strand

Previous Assembly
chr10:43,912,698-43,912,888
(GRCh37/hg19 by Entrez Gene)
Size:
191 bases
Orientation:
Minus strand

chr10:43,912,698-43,912,888
(GRCh37/hg19 by Ensembl)
Size:
191 bases
Orientation:
Minus strand

Genomic View for SNORD3J Gene

Genes around SNORD3J on UCSC Golden Path with GeneCards custom track
SNORD3J in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD3J Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3J Gene

Proteins for SNORD3J Gene

Post-translational modifications for SNORD3J Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3J Gene

Domains & Families for SNORD3J Gene

Gene Families for SNORD3J Gene

genes like me logo Genes that share domains with SNORD3J: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD3J Gene

Function for SNORD3J Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3J Gene

Localization for SNORD3J Gene

Gene Ontology (GO) - Cellular Components for SNORD3J Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD3J: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD3J Gene

Pathways & Interactions for SNORD3J Gene

PathCards logo

SuperPathways for SNORD3J Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD3J Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD3J: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD3J Gene

Drugs & Compounds for SNORD3J Gene

No Compound Related Data Available

Transcripts for SNORD3J Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD3J Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000668EAA_9606 snoRNA 190 3

Ensembl: ENST00000408473 (view in UCSC) ,

Rfam: RF00012,

snoDB: SNODB1925,

URS0000ABD851_9606 snoRNA 191 2

RefSeq: NR_145740,

snoDB: SNODB2056,

URS0000828500_9606 snoRNA 187 2

snoDB: SNODB1810,

snOPY: Homo_sapiens300287,

SNORD3J in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3J Gene

No ASD Table

Relevant External Links for SNORD3J Gene

GeneLoc Exon Structure for
SNORD3J

No data available for mRNA/cDNA for SNORD3J Gene

Expression for SNORD3J Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3J Gene

Orthologs for SNORD3J Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD3J Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U3 31
  • 99 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia U3 31 31 31 31 31 31 31 31 31
  • 62 (a)
ManyToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia U3 31 31 31 31 31 31 31 31
  • 59 (a)
ManyToMany
Chicken
(Gallus gallus)
Aves U3 31 31 31
  • 61 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia U3 31
  • 58 (a)
OneToMany
Species where no ortholog for SNORD3J was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD3J Gene

ENSEMBL:
Gene Tree for SNORD3J (if available)
TreeFam:
Gene Tree for SNORD3J (if available)

Paralogs for SNORD3J Gene

No data available for Paralogs for SNORD3J Gene

Variants for SNORD3J Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD3J Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SNORD3J Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3J

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3J Gene

Disorders for SNORD3J Gene

Additional Disease Information for SNORD3J

No disorders were found for SNORD3J Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3J Gene

Publications for SNORD3J Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORD3J Gene

Products for SNORD3J Gene

Sources for SNORD3J Gene