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SNORD3J (Small Nucleolar RNA, C/D Box 3J) is an RNA Gene, and is affiliated with the snoRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH10J043384 | Enhancer | 0.8 | dbSUPER | 12.9 | +30.3 | 30254 | 4.6 | HNRNPL IKZF1 POLR2A DDX20 HNRNPUL1 RBFOX2 SMAD5 ZNF501 ZNF600 ZNF341 | piR-61811 ENSG00000230555 HNRNPF HNRNPA3P1 EIF3LP2 SNORD3J ZNF487 RNU7-193P RASGEF1A BMS1 | |
GH10J043416 | Promoter/Enhancer | 2.3 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.7 | -2.1 | -2103 | 6.1 | ARHGAP35 CEBPG HNRNPL GATAD2A CTCF ATF7 PRDM10 REST ZNF629 TFE3 | ENSG00000230555 BMS1 ZNF32-AS2 EIF3LP2 ZNF33B ZNF239 ENSG00000259869 HNRNPF CSGALNACT2 SNORD3J | |
GH10J043413 | Enhancer | 0.3 | Ensembl | 0.7 | +3.8 | 3839 | 0.8 | ZBTB33 | ENSG00000230555 HNRNPF SNORD3J lnc-ZNF487-4 ZNF487 lnc-HNRNPF-1 |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005730 | nucleolus | IEA | -- |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000ABD851_9606 | snoRNA | 191 | 3 |
HGNC: 52243, RefSeq: NR_145740, snoDB: SNODB2056, |
URS0000668EAA_9606 | snoRNA | 190 | 3 |
Ensembl: ENST00000408473 (view in UCSC) , Rfam: RF00012, snoDB: SNODB1925, |
URS0000828500_9606 | snoRNA | 187 | 2 |
snoDB: SNODB1810, snOPY: Homo_sapiens300287, |
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | U3 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | U3 31 31 31 31 31 31 31 31 31 |
|
ManyToMany | |
Platypus (Ornithorhynchus anatinus) |
Mammalia | U3 31 31 31 31 31 31 31 31 |
|
ManyToMany | |
Chicken (Gallus gallus) |
Aves | U3 31 31 31 |
|
ManyToMany | |
Lizard (Anolis carolinensis) |
Reptilia | U3 31 |
|
OneToMany |
No disorders were found for SNORD3J Gene.