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Aliases for SNORD3J Gene
Subcategory (RNA class) for SNORD3J Gene
snoRNA
Aliases for SNORD3J Gene
External Ids for SNORD3J Gene
- HGNC: 52243
- NCBI Entrez Gene: 109616985
- Ensembl: ENSG00000221400
Previous GeneCards Identifiers for SNORD3J Gene
- GC00U936720
- GC10U902695
Summaries for SNORD3J Gene
GeneCards Summary for SNORD3J Gene
SNORD3J (Small Nucleolar RNA, C/D Box 3J) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD3J Gene
-
Small nucleolar RNA U3
Additional gene information for SNORD3J Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD3J Gene
Genomics for SNORD3J Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD3J Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH10J043416 | Promoter/Enhancer | 2.3 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.7 | -2.1 | -2103 | 6.1 | TBP ZBTB10 MXD4 CEBPA MNT IKZF1 SMAD5 HES1 ZFP64 MBD2 | HSALNG0077548 ZNF32-AS2 BMS1 EIF3LP2 ENSG00000230555 ZNF33B ZNF239 ENSG00000259869 HNRNPF CSGALNACT2 | |
| GH10J043413 | Enhancer | 0.3 | Ensembl | 0.7 | +3.8 | 3839 | 0.8 | ZBTB33 | ENSG00000230555 HNRNPF SNORD3J lnc-ZNF487-4 ZNF487 lnc-HNRNPF-1 | |
| GH10J043412 | Enhancer | 0.2 | Ensembl | 0.7 | +4.8 | 4839 | 0.4 | HNRNPF SNORD3J lnc-ZNF487-4 ZNF487 lnc-HNRNPF-1 ENSG00000230555 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD3J on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNORD3J Gene
Latest Assembly
- chr10:43,417,249-43,417,440
- (GRCh38/hg38)
- Size:
- 192 bases
- Orientation:
- Minus strand
Previous Assembly
- chr10:43,912,698-43,912,888
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 191 bases
- Orientation:
- Minus strand
- chr10:43,912,698-43,912,888
- (GRCh37/hg19 by Ensembl)
- Size:
- 191 bases
- Orientation:
- Minus strand
Genomic View for SNORD3J Gene
Genes around SNORD3J on UCSC Golden Path with GeneCards custom track
SNORD3J in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 10q11.21 by HGNC
- 10q11.21 by Entrez Gene
- 10q11.21 by Ensembl
SNORD3J Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD3J Gene
Proteins for SNORD3J Gene
Post-translational modifications for SNORD3J Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD3J Gene
Domains & Families for SNORD3J Gene
Gene Families for SNORD3J Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD3J Gene
Function for SNORD3J Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3J Gene
Localization for SNORD3J Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD3J Gene
Pathways & Interactions for SNORD3J Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD3J Gene
Transcripts for SNORD3J Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD3J Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000668EAA_9606 | snoRNA | 190 | 3 |
Ensembl: ENST00000408473 (view in UCSC) , Rfam: RF00012, snoDB: SNODB1925, |
| URS0000ABD851_9606 | snoRNA | 191 | 2 |
RefSeq: NR_145740, snoDB: SNODB2056, |
| URS0000828500_9606 | snoRNA | 187 | 2 |
snoDB: SNODB1810, snOPY: Homo_sapiens300287, |
SNORD3J in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD3J Gene
- GeneLoc Exon Structure for
- SNORD3J
No data available for mRNA/cDNA for SNORD3J Gene
Expression for SNORD3J Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3J Gene
Orthologs for SNORD3J Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | U3 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | U3 31 31 31 31 31 31 31 31 31 |
|
ManyToMany | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | U3 31 31 31 31 31 31 31 31 |
|
ManyToMany | |
| Chicken (Gallus gallus) |
Aves | U3 31 31 31 |
|
ManyToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | U3 31 |
|
OneToMany |
- Species where no ortholog for SNORD3J was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for SNORD3J Gene
No data available for Paralogs for SNORD3J Gene
Variants for SNORD3J Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD3J Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD3J
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3J Gene
Disorders for SNORD3J Gene
Additional Disease Information for SNORD3J
No disorders were found for SNORD3J Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3J Gene
Publications for SNORD3J Gene
- An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3
No data available for Mastermind for SNORD3J Gene
Products for SNORD3J Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD3J
- Origene Custom Protein Services for SNORD3J
- Browse OriGene Inhibitory RNA Products For SNORD3J
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD3J
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD3J
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD3J
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD3J
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD3J
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD3J
Sources for SNORD3J Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB