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SNORD3J Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 3J

GCID:
GC10M043418
GIFtS:
10
Genes Participants
UDN Logo

Aliases for SNORD3J Gene

Subcategory (RNA class) for SNORD3J Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD3J Gene

  • Small Nucleolar RNA, C/D Box 3J 2 3 5

External Ids for SNORD3J Gene

ORGUL Members for SNORD3J Gene

Previous GeneCards Identifiers for SNORD3J Gene

  • GC00U936720
  • GC10U902695

Summaries for SNORD3J Gene

GeneCards Summary for SNORD3J Gene

SNORD3J (Small Nucleolar RNA, C/D Box 3J) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD3J Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD3J Gene

Genomics for SNORD3J Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD3J Gene

Promoters and enhancers for SNORD3J Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10I043384 Enhancer 0.8 dbSUPER 12.9 +30.3 30252 4.6 HNRNPUL1 SMAD1 KLF17 MZF1 ZNF48 POLR2B E2F8 EGR1 SCRT2 RUNX3 PIR56810 LOC105378272 HNRNPF HNRNPA3P1 EIF3LP2 SNORD3J ZNF487 RNU7-193P RASGEF1A BMS1
GH10I043416 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.1 -2105 6.1 CLOCK MLX ZFP64 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC PPARGC1A LOC105378272 GC10P043423 BMS1 ZNF32-AS2 EIF3LP2 ZNF33B ZNF239 ENSG00000259869 HNRNPF CSGALNACT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD3J on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD3J Gene

Genomic Locations for SNORD3J Gene
chr10:43,417,249-43,417,438
(GRCh38/hg38)
Size:
190 bases
Orientation:
Minus strand
chr10:43,912,698-43,912,888
(GRCh37/hg19)

Genomic View for SNORD3J Gene

Genes around SNORD3J on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3J Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3J Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for SNORD3J Gene

Proteins for SNORD3J Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD3J Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3J Gene

Domains & Families for SNORD3J Gene

Gene Families for SNORD3J Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD3J: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD3J Gene

Function for SNORD3J Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3J Gene

Localization for SNORD3J Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD3J Gene

Pathways & Interactions for SNORD3J Gene

SuperPathways for SNORD3J Gene

PathCards logo More details on SuperPathways for SNORD3J
No Data Available

Interacting Proteins for SNORD3J Gene

Gene Ontology (GO) - Biological Process for SNORD3J Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD3J Gene

Drugs & Compounds for SNORD3J Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD3J Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD3J Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3J Gene

No ASD Table

Relevant External Links for SNORD3J Gene

GeneLoc Exon Structure for
SNORD3J
ECgene alternative splicing isoforms for
SNORD3J

Expression for SNORD3J Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3J Gene

Orthologs for SNORD3J Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD3J Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia U3 34
  • 99 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia U3 34 34 34 34 34 34 34 34 34
  • 62 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia U3 34 34 34 34 34 34 34 34
  • 50 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves U3 34 34 34
  • 60 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia U3 34
  • 58 (a)
 OneToMany
Species where no ortholog for SNORD3J was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3J Gene

ENSEMBL:
Gene Tree for SNORD3J (if available)
TreeFam:
Gene Tree for SNORD3J (if available)

Paralogs for SNORD3J Gene

No data available for Paralogs for SNORD3J Gene

Variants for SNORD3J Gene

Additional Variant Information for SNORD3J Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3J

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3J Gene

Disorders for SNORD3J Gene

Additional Disease Information for SNORD3J

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD3J Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3J Gene

Publications for SNORD3J Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 58

Products for SNORD3J Gene

Sources for SNORD3J Gene

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