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Aliases for SNORD3F Gene
Data sources for SNORD3F Gene:
Subcategory (RNA class) for SNORD3F Gene
snoRNA
Aliases for SNORD3F Gene
- Small Nucleolar RNA, C/D Box 3F (HGNC, NCBI Entrez Gene)
- Small Nucleolar RNA, C/D Box 3 Pseudogene 2 (HGNC, NCBI Entrez Gene)
- RNA, U3 Small Nucleolar Pseudogene 2 (HGNC, NCBI Entrez Gene)
- U3.2 (HGNC, NCBI Entrez Gene)
- U3 (HGNC, NCBI Entrez Gene)
- SNODB2054 (snoDB)
- SNODB1907 (snoDB)
- SNORD3P2 (NCBI Entrez Gene)
- RF00012 (Rfam)
- RNU3P2 (NCBI Entrez Gene)
Previous HGNC Symbols for SNORD3F Gene
- SNORD3P2
- RNU3P2
Previous GeneCards Identifiers for SNORD3F Gene
- GC08U902724
- GC00U936717
Summaries for SNORD3F Gene
GeneCards Summary for SNORD3F Gene
SNORD3F (Small Nucleolar RNA, C/D Box 3F) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD3F Gene
-
Small nucleolar RNA U3
Additional gene information for SNORD3F Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD3F Gene
Genomics for SNORD3F Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD3F Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH08J020624 | Enhancer | 0.5 | Ensembl | 0.4 | -10.2 | -10175 | 0.6 | RXRA EGR1 EGR2 MNT ZFHX2 | ENSG00000253164 HSALNG0063816 SNORD3F LZTS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD3F on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SNORD3F Gene
Latest Assembly
- chr8:20,614,829-20,614,926
- (GRCh38/hg38)
- Size:
- 98 bases
- Orientation:
- Minus strand
Previous Assembly
- chr8:20,472,340-20,472,437
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 98 bases
- Orientation:
- Minus strand
Genomic View for SNORD3F Gene
Genes around SNORD3F on UCSC Golden Path with GeneCards custom track
SNORD3F in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 8p21.3 by HGNC
- 8p21.3 by Entrez Gene
SNORD3F Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD3F Gene
Proteins for SNORD3F Gene
Post-translational modifications for SNORD3F Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD3F Gene
Domains & Families for SNORD3F Gene
Gene Families for SNORD3F Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD3F Gene
Function for SNORD3F Gene
Phenotypes From GWAS Catalog for SNORD3F Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD3F - Starting at $85 >
- * SNORD3F CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3F Gene
Localization for SNORD3F Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD3F Gene
Pathways & Interactions for SNORD3F Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD3F Gene
Transcripts for SNORD3F Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD3F Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A9C359_9606 | snoRNA | 98 | 2 |
RefSeq: NR_145737, snoDB: SNODB2054, |
| URS000066B30B_9606 | snoRNA | 94 | 2 |
Rfam: RF00012, snoDB: SNODB1907, |
SNORD3F in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD3F - Starting at $85 >
- * SNORD3F CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD3F Gene
- GeneLoc Exon Structure for
- SNORD3F
No data available for mRNA/cDNA for SNORD3F Gene
Expression for SNORD3F Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3F Gene
Orthologs for SNORD3F Gene
No data available for Orthologs and Evolution for SNORD3F Gene
Paralogs for SNORD3F Gene
No data available for Paralogs for SNORD3F Gene
Variants for SNORD3F Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD3F Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD3F
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3F Gene
Disorders for SNORD3F Gene
Additional Disease Information for SNORD3F
No disorders were found for SNORD3F Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3F Gene
Publications for SNORD3F Gene
- An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3
- Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. (PMID: 6186397) Bernstein LB … Weiner AM (Cell 1983) 3
ExternalLinks
Products for SNORD3F Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD3F
- Origene Custom Protein Services for SNORD3F
- Browse OriGene Inhibitory RNA Products For SNORD3F
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD3F
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD3F
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD3F
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD3F
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD3F
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD3F
Sources for SNORD3F Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB