Aliases for SNORD3F Gene

Subcategory (RNA class) for SNORD3F Gene

snoRNA

Number of RNA Genes sources:

2 / 17

Aliases for SNORD3F Gene

  • Small Nucleolar RNA, C/D Box 3F 2 3
  • Small Nucleolar RNA, C/D Box 3 Pseudogene 2 2 3
  • RNA, U3 Small Nucleolar Pseudogene 2 2 3
  • U3.2 2 3
  • U3 2 3
  • SNODB2054 177
  • SNODB1907 177
  • SNORD3P2 3
  • SNORD3F 2
  • RF00012 168
  • RNU3P2 3

External Ids for SNORD3F Gene

Previous HGNC Symbols for SNORD3F Gene

  • SNORD3P2
  • RNU3P2

Previous GeneCards Identifiers for SNORD3F Gene

  • GC08U902724
  • GC00U936717

Summaries for SNORD3F Gene

GeneCards Summary for SNORD3F Gene

SNORD3F (Small Nucleolar RNA, C/D Box 3F) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD3F Gene

Additional gene information for SNORD3F Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD3F Gene

Genomics for SNORD3F Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD3F Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J020624 Enhancer 0.5 Ensembl 0.4 -10.2 -10175 0.6 MNT EGR1 ZFHX2 RXRA EGR2 ENSG00000253164 HSALNG0063816 SNORD3F LZTS1
GH08J020598 Enhancer 0.3 Ensembl 0.4 +16.2 16225 0.6 EZH2 PKNOX1 FJ601678-110 SNORD3F LZTS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD3F on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORD3F Gene

Genomic Locations for SNORD3F Gene
chr8:20,614,829-20,614,926
(GRCh38/hg38)
Size:
98 bases
Orientation:
Minus strand
chr8:20,472,340-20,472,437
(GRCh37/hg19)
Size:
98 bases
Orientation:
Minus strand

Genomic View for SNORD3F Gene

Genes around SNORD3F on UCSC Golden Path with GeneCards custom track
SNORD3F in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD3F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3F Gene

Proteins for SNORD3F Gene

Post-translational modifications for SNORD3F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3F Gene

Domains & Families for SNORD3F Gene

Gene Families for SNORD3F Gene

genes like me logo Genes that share domains with SNORD3F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD3F Gene

Function for SNORD3F Gene

Phenotypes From GWAS Catalog for SNORD3F Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3F Gene

Localization for SNORD3F Gene

Gene Ontology (GO) - Cellular Components for SNORD3F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD3F: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD3F Gene

Pathways & Interactions for SNORD3F Gene

PathCards logo

SuperPathways for SNORD3F Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD3F Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD3F: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD3F Gene

Drugs & Compounds for SNORD3F Gene

No Compound Related Data Available

Transcripts for SNORD3F Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD3F Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A9C359_9606 snoRNA 98 3

HGNC: 52239,

RefSeq: NR_145737,

snoDB: SNODB2054,

URS000066B30B_9606 snoRNA 94 2

Rfam: RF00012,

snoDB: SNODB1907,

SNORD3F in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3F Gene

No ASD Table

Relevant External Links for SNORD3F Gene

GeneLoc Exon Structure for
SNORD3F

No data available for mRNA/cDNA for SNORD3F Gene

Expression for SNORD3F Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3F Gene

Orthologs for SNORD3F Gene

No data available for Orthologs and Evolution for SNORD3F Gene

Paralogs for SNORD3F Gene

No data available for Paralogs for SNORD3F Gene

Variants for SNORD3F Gene

Additional dbSNP identifiers (rs#s) for SNORD3F Gene

Additional Variant Information for SNORD3F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD3F Gene

Disorders for SNORD3F Gene

Additional Disease Information for SNORD3F

No disorders were found for SNORD3F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3F Gene

Publications for SNORD3F Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3
  2. Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites. (PMID: 6186397) Bernstein LB … Weiner AM (Cell 1983) 3

Products for SNORD3F Gene

Sources for SNORD3F Gene