Aliases for SNORD3B-2 Gene

Subcategory (RNA class) for SNORD3B-2 Gene

snoRNA

Quality Score for this RNA gene is

18

Aliases for SNORD3B-2 Gene

  • Small Nucleolar RNA, C/D Box 3B-2 2 3 5
  • U3 Small Nucleolar RNA B-2 2 3
  • U3 SnoRNA B-2 2 3
  • HSALNG0115091 169
  • Lnc-SLC5A10-3 170
  • Lnc-GRAP-1 170
  • SNORD3B-2 2
  • SNORD3B-1 2
  • SNORD3@ 176
  • RF00012 174
  • U3-2B 3
  • U3b2 3

External Ids for SNORD3B-2 Gene

Previous GeneCards Identifiers for SNORD3B-2 Gene

  • GC17U900820
  • GC17M018910
  • GC17M018967

Summaries for SNORD3B-2 Gene

GeneCards Summary for SNORD3B-2 Gene

SNORD3B-2 (Small Nucleolar RNA, C/D Box 3B-2) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are RNA transport and Ribosome biogenesis in eukaryotes.

Rfam classification for SNORD3B-2 Gene

Additional gene information for SNORD3B-2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD3B-2 Gene

Genomics for SNORD3B-2 Gene

GeneHancer (GH) Regulatory Elements for SNORD3B-2 Gene

Promoters and enhancers for SNORD3B-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J019061 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 750.6 +1.2 1235 4.6 FOXK2 ZNF24 ZBTB6 MLX RBPJ POLR2A CTBP1 RUNX1 MIXL1 ZNF362 AH005784-001 AH005784-002 SNORD3B-1 SNORD3B-2 lnc-GRAP-1 lnc-SLC5A10-3 DRG2 FOXO3B RPS2P46 TVP23B
GH17J019067 Enhancer 0.2 Ensembl 0.6 -3.2 -3165 0.2 AH005784-002 SNORD3B-2 lnc-GRAP-1 ENSG00000230197
GH17J019076 Enhancer 0.2 Ensembl 0.4 -13.5 -13465 3.6 ENSG00000230197 AH005784-002 lnc-GRAP-1 SNORD3B-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD3B-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD3B-2 Gene

Genomic Locations for SNORD3B-2 Gene
chr17:19,063,346-19,064,136
(GRCh38/hg38)
Size:
791 bases
Orientation:
Minus strand
chr17:18,966,762-18,967,449
(GRCh37/hg19)
Size:
688 bases
Orientation:
Minus strand

Genomic View for SNORD3B-2 Gene

Genes around SNORD3B-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD3B-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD3B-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD3B-2 Gene

Proteins for SNORD3B-2 Gene

Post-translational modifications for SNORD3B-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD3B-2 Gene

Domains & Families for SNORD3B-2 Gene

Gene Families for SNORD3B-2 Gene

genes like me logo Genes that share domains with SNORD3B-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD3B-2 Gene

Function for SNORD3B-2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD3B-2 Gene

Localization for SNORD3B-2 Gene

Gene Ontology (GO) - Cellular Components for SNORD3B-2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD3B-2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD3B-2 Gene

Pathways & Interactions for SNORD3B-2 Gene

PathCards logo

SuperPathways for SNORD3B-2 Gene

genes like me logo Genes that share pathways with SNORD3B-2: view

Pathways by source for SNORD3B-2 Gene

2 KEGG pathways for SNORD3B-2 Gene

Gene Ontology (GO) - Biological Process for SNORD3B-2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD3B-2: view

No data available for SIGNOR curated interactions for SNORD3B-2 Gene

Drugs & Compounds for SNORD3B-2 Gene

No Compound Related Data Available

Transcripts for SNORD3B-2 Gene

mRNA/cDNA for SNORD3B-2 Gene

(2) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(1) ENA transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :
(1) Rfam transcripts :
(2) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD3B-2 Gene

No ASD Table

Relevant External Links for SNORD3B-2 Gene

GeneLoc Exon Structure for
SNORD3B-2
ECgene alternative splicing isoforms for
SNORD3B-2

Expression for SNORD3B-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD3B-2 Gene

mRNA differential expression in normal tissues according to GTEx for SNORD3B-2 Gene

This gene is overexpressed in Testis (x5.2) and Skin - Not Sun Exposed (Suprapubic) (x5.0).
genes like me logo Genes that share expression patterns with SNORD3B-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD3B-2 Gene

Orthologs for SNORD3B-2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD3B-2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia U3 33 33
  • 94 (a)
ManyToMany
Species where no ortholog for SNORD3B-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD3B-2 Gene

ENSEMBL:
Gene Tree for SNORD3B-2 (if available)
TreeFam:
Gene Tree for SNORD3B-2 (if available)

Paralogs for SNORD3B-2 Gene

No data available for Paralogs for SNORD3B-2 Gene

Variants for SNORD3B-2 Gene

Sequence variations from dbSNP and Humsavar for SNORD3B-2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001472498 -- 19,064,373(-) G/A upstream_transcript_variant
rs1014515678 -- 19,064,479(-) G/A upstream_transcript_variant
rs1019751480 -- 19,063,505(-) C/A/T downstream_transcript_variant
rs1020042886 -- 19,063,710(-) AAAAA/AA/AAA downstream_transcript_variant
rs1020832048 -- 19,064,499(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD3B-2 Gene

Variant ID Type Subtype PubMed ID
dgv1701e59 CNV duplication 20981092
dgv3116n100 CNV gain 25217958
dgv895e212 CNV loss 25503493
esv25927 CNV gain+loss 19812545
esv2758678 CNV gain+loss 17122850
esv33572 CNV gain 17666407
esv3431325 CNV duplication 20981092
esv3892975 CNV loss 25118596
esv3892976 CNV loss 25118596
nsv1061317 CNV gain 25217958
nsv428336 CNV gain+loss 18775914
nsv511054 OTHER complex 20534489
nsv574554 CNV loss 21841781
nsv7291 OTHER inversion 18451855
nsv833391 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv962450 CNV duplication 23825009
nsv978384 CNV duplication 23825009

Additional Variant Information for SNORD3B-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD3B-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD3B-2 Gene

Disorders for SNORD3B-2 Gene

Additional Disease Information for SNORD3B-2

No disorders were found for SNORD3B-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD3B-2 Gene

Publications for SNORD3B-2 Gene

  1. Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. (PMID: 9365252) Gao L … Matera AG (Nucleic acids research 1997) 2 3 56
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56
  3. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 56
  4. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K … Steitz JA (The EMBO journal 1989) 3 56

Products for SNORD3B-2 Gene

Sources for SNORD3B-2 Gene