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Aliases for SNORD38C Gene

Subcategory (RNA class) for SNORD38C Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD38C Gene

  • Small Nucleolar RNA, C/D Box 38C 2 3 5

External Ids for SNORD38C Gene

ORGUL Members for SNORD38C Gene

Previous GeneCards Identifiers for SNORD38C Gene

  • GC00U936762
  • GC03U903127

Summaries for SNORD38C Gene

GeneCards Summary for SNORD38C Gene

SNORD38C (Small Nucleolar RNA, C/D Box 38C) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORD38C Gene - the ORGUL cluster for this gene includes several descriptions:

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

  • Small nucleolar RNA SNORD38: U38 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and D (CUGA) box motifs. U38 is located in introns 4 and 5 of ribosomal protein S8 in human and in homologous genes in mouse and cow [1]. U38 guides the methylation of 2'-O-ribose residues in 28S rRNA. Mouse MBII-329 snoRNA is homologous to U38 [2].

View fRNAdb secondary structures for SNORD38C

Additional gene information for SNORD38C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD38C Gene

Genomics for SNORD38C Gene

GeneHancer (GH) Regulatory Elements for SNORD38C Gene

Promoters and enhancers for SNORD38C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J053268 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +62.8 62751 3.6 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 FOS DEK PRKCD SNORD38C TKT SFMBT1 DCP1A PIR47365 GC03M053284
GH03J053233 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +93.7 93734 10.9 FOXA2 MLX ARID4B SIN3A GLI4 YY1 ZNF766 GLIS2 FOS NFKBIZ PRKCD SNORD38C TKT DCP1A ITIH4 GNL3 STIMATE
GH03J053195 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.8 +136.6 136565 1.8 HDGF PKNOX1 ARNT ARID4B SIN3A YBX1 ZNF2 ZBTB7B ZNF48 GLIS2 RFT1 PRKCD PBRM1 SNORD38C TKT DCP1A ITIH4
GH03J053354 Enhancer 1.1 Ensembl ENCODE 11.6 -22.2 -22187 1.1 HDAC1 ATF1 ZNF133 TCF12 ZNF766 CAVIN1 ZBTB2 ZBTB11 CEBPB ZEB2 PBRM1 SNORD38C ENSG00000212608 GLT8D1 GNL3 DCP1A RFT1 TKT LOC105377094 CACNA1D
GH03J053517 Enhancer 1.1 Ensembl ENCODE dbSUPER 9.9 -186.0 -186028 2.8 ESRRA JUN ZNF140 SIN3A CEBPG RAD21 YY1 GATA3 RCOR1 FOSL2 GLT8D1 RFT1 CACNA1D SNORD38C PBRM1 NT5DC2 TKT GC03P053524 RPS25P4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD38C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD38C Gene

Genomic Locations for SNORD38C Gene
chr3:53,333,060-53,333,128
(GRCh38/hg38)
Size:
69 bases
Orientation:
Minus strand
chr3:53,367,087-53,367,155
(GRCh37/hg19)
Size:
69 bases
Orientation:
Minus strand

Genomic View for SNORD38C Gene

Genes around SNORD38C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD38C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD38C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38C Gene

ORGUL Member Location for SNORD38C Gene

ORGUL Member Location for SNORD38C gene

Proteins for SNORD38C Gene

Post-translational modifications for SNORD38C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38C Gene

Domains & Families for SNORD38C Gene

Gene Families for SNORD38C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38C Gene

Function for SNORD38C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD38C Gene

Localization for SNORD38C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD38C Gene

Pathways & Interactions for SNORD38C Gene

SuperPathways for SNORD38C Gene

No Data Available

Interacting Proteins for SNORD38C Gene

Gene Ontology (GO) - Biological Process for SNORD38C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD38C Gene

Drugs & Compounds for SNORD38C Gene

No Compound Related Data Available

Transcripts for SNORD38C Gene

fRNAdb Secondary structures for SNORD38C Gene

  • RF00212;SNORD38;ABSL01052120.1/15839-15907

mRNA/cDNA for SNORD38C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38C Gene

No ASD Table

Relevant External Links for SNORD38C Gene

GeneLoc Exon Structure for
SNORD38C
ECgene alternative splicing isoforms for
SNORD38C

Expression for SNORD38C Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD38C Gene

Orthologs for SNORD38C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD38 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD38 34
  • 81 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23615 34
  • 78 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD38 34
  • 72 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD38 34
  • 64 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD38 34
  • 63 (a)
OneToMany
Species where no ortholog for SNORD38C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD38C Gene

ENSEMBL:
Gene Tree for SNORD38C (if available)
TreeFam:
Gene Tree for SNORD38C (if available)

Paralogs for SNORD38C Gene

No data available for Paralogs for SNORD38C Gene

Variants for SNORD38C Gene

Additional Variant Information for SNORD38C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD38C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD38C Gene

Disorders for SNORD38C Gene

Additional Disease Information for SNORD38C

No disorders were found for SNORD38C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD38C Gene

Publications for SNORD38C Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 58
  2. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 1
  3. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 1

Products for SNORD38C Gene

Sources for SNORD38C Gene

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