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Aliases for SNORD38B Gene

Subcategory (RNA class) for SNORD38B Gene


Quality Score for this RNA gene is


Aliases for SNORD38B Gene

  • Small Nucleolar RNA, C/D Box 38B 2 3 5
  • RNA, U38B Small Nucleolar 2 3
  • U38B Small Nucleolar RNA 3
  • U38B SnoRNA 3
  • RNU38B 3
  • U38B 3

External Ids for SNORD38B Gene

Previous HGNC Symbols for SNORD38B Gene

  • RNU38B

Previous GeneCards Identifiers for SNORD38B Gene

  • GC01P045018
  • GC01P045244
  • GC01P045246
  • GC01P043357
  • GC01P044779
  • GC01P044786
  • GC01P044793
  • GC01P044800
  • GC01P044808
  • GC01P044814
  • GC01P044820
  • GC01P044826

Summaries for SNORD38B Gene

GeneCards Summary for SNORD38B Gene

SNORD38B (Small Nucleolar RNA, C/D Box 38B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD38B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38B Gene

Genomics for SNORD38B Gene

GeneHancer (GH) Regulatory Elements for SNORD38B Gene

Promoters and enhancers for SNORD38B Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J044720 Enhancer 1.5 Ensembl ENCODE dbSUPER 11.6 -55.6 -55586 4.8 MLX ZFP64 FEZF1 YBX1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC GC01M044722 RNU5F-1 LOC105378690 TOE1 GPBP1L1 RPL7AP16 MUTYH HECTD3 RPS8 DMAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD38B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD38B gene promoter:
  • AP-1
  • c-Jun
  • ATF-2
  • Nkx2-5
  • Hand1
  • E47
  • SRF
  • SRF (504 AA)
  • LyF-1

Genomic Locations for SNORD38B Gene

Genomic Locations for SNORD38B Gene
69 bases
Plus strand
69 bases
Plus strand

Genomic View for SNORD38B Gene

Genes around SNORD38B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD38B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD38B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38B Gene

Proteins for SNORD38B Gene

Post-translational modifications for SNORD38B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38B Gene

Domains & Families for SNORD38B Gene

Gene Families for SNORD38B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38B Gene

Function for SNORD38B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD38B Gene

Localization for SNORD38B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD38B Gene

Pathways & Interactions for SNORD38B Gene

SuperPathways for SNORD38B Gene

No Data Available

Interacting Proteins for SNORD38B Gene

Gene Ontology (GO) - Biological Process for SNORD38B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD38B Gene

Drugs & Compounds for SNORD38B Gene

No Compound Related Data Available

Transcripts for SNORD38B Gene

mRNA/cDNA for SNORD38B Gene

(485) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38B Gene

No ASD Table

Relevant External Links for SNORD38B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD38B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD38B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD38B Gene:

genes like me logo Genes that share expression patterns with SNORD38B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD38B Gene

Orthologs for SNORD38B Gene

Evolution for SNORD38B Gene

Gene Tree for SNORD38B (if available)
Gene Tree for SNORD38B (if available)

No data available for Orthologs for SNORD38B Gene

Paralogs for SNORD38B Gene

No data available for Paralogs for SNORD38B Gene

Variants for SNORD38B Gene

Sequence variations from dbSNP and Humsavar for SNORD38B Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000374451 -- 44,777,152(+) G/C upstream_transcript_variant
rs1001572494 -- 44,778,458(+) A/G non_coding_transcript_variant
rs1005072649 -- 44,778,820(+) A/G downstream_transcript_variant
rs1006185349 -- 44,777,509(+) T/G upstream_transcript_variant
rs1008082192 -- 44,776,910(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD38B Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV loss 19166990
nsv546145 CNV loss 21841781
nsv945912 CNV duplication 23825009
nsv998871 CNV loss 25217958

Additional Variant Information for SNORD38B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD38B Gene

Disorders for SNORD38B Gene

Additional Disease Information for SNORD38B

No disorders were found for SNORD38B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD38B Gene

Publications for SNORD38B Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD38B Gene

Sources for SNORD38B Gene

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