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Aliases for SNORD38A Gene

Subcategory (RNA class) for SNORD38A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD38A Gene

  • Small Nucleolar RNA, C/D Box 38A 2 3 5
  • RNA, U38A Small Nucleolar 2 3
  • U38A Small Nucleolar RNA 3
  • U38A SnoRNA 3
  • RNU38A 3
  • U38A 3

External Ids for SNORD38A Gene

Previous HGNC Symbols for SNORD38A Gene

  • RNU38A

Previous GeneCards Identifiers for SNORD38A Gene

  • GC01P045017
  • GC01P045243
  • GC01P043356
  • GC01P044778
  • GC01P044785
  • GC01P044791
  • GC01P044798
  • GC01P044802
  • GC01P044812
  • GC01P044818

Summaries for SNORD38A Gene

GeneCards Summary for SNORD38A Gene

SNORD38A (Small Nucleolar RNA, C/D Box 38A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD38A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD38A Gene

Genomics for SNORD38A Gene

GeneHancer (GH) Regulatory Elements for SNORD38A Gene

Promoters and enhancers for SNORD38A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I044774 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.6 -1624 3.7 ZFP64 DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 MCM3 SP3 RPS8 ENSG00000225721 GC01P044811 GC01P044822 GC01P044828 GC01P044830 GC01P044831 GC01P044833 SNORD38A SNORD55
GH01I044805 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 +32.6 32609 10.7 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 MEF2D SSRP1 BTBD19 TOE1 GPBP1L1 RPS8 HECTD3 MUTYH RPL7AP16 RPS15AP10 ENSG00000225721 UROD
GH01I044746 Promoter 0.5 EPDnew 12 -31.4 -31448 0.1 KIF2C RPS8 ENSG00000225721 SNORD38A SNORD46 RNU5F-1 PLK3 TCTEX1D4 BTBD19 C1orf228
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD38A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD38A gene promoter:

Genomic Locations for SNORD38A Gene

Genomic Locations for SNORD38A Gene
chr1:44,777,842-44,777,912
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand
chr1:45,243,514-45,243,584
(GRCh37/hg19)

Genomic View for SNORD38A Gene

Genes around SNORD38A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD38A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD38A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD38A Gene

Proteins for SNORD38A Gene

Post-translational modifications for SNORD38A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD38A Gene

Domains & Families for SNORD38A Gene

Gene Families for SNORD38A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD38A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD38A Gene

Function for SNORD38A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD38A Gene

Localization for SNORD38A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD38A Gene

Pathways & Interactions for SNORD38A Gene

SuperPathways for SNORD38A Gene

No Data Available

Interacting Proteins for SNORD38A Gene

Gene Ontology (GO) - Biological Process for SNORD38A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD38A Gene

Drugs & Compounds for SNORD38A Gene

No Compound Related Data Available

Transcripts for SNORD38A Gene

mRNA/cDNA for SNORD38A Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD38A Gene

No ASD Table

Relevant External Links for SNORD38A Gene

GeneLoc Exon Structure for
SNORD38A
ECgene alternative splicing isoforms for
SNORD38A

Expression for SNORD38A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD38A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD38A Gene:

SNORD38A
genes like me logo Genes that share expression patterns with SNORD38A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD38A Gene

Orthologs for SNORD38A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD38A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD38 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD38 34
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord38a 34
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD38 34
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD38 34
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD38 34
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD38 34
  • 73 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD38 34
  • 68 (a)
OneToOne
Species where no ortholog for SNORD38A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD38A Gene

ENSEMBL:
Gene Tree for SNORD38A (if available)
TreeFam:
Gene Tree for SNORD38A (if available)

Paralogs for SNORD38A Gene

No data available for Paralogs for SNORD38A Gene

Variants for SNORD38A Gene

Sequence variations from dbSNP and Humsavar for SNORD38A Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000374451 -- 44,777,152(+) G/C upstream_transcript_variant
rs1002100619 -- 44,776,212(+) C/A upstream_transcript_variant
rs1004247964 -- 44,776,238(+) G/C upstream_transcript_variant
rs1006185349 -- 44,777,509(+) T/G upstream_transcript_variant
rs1008082192 -- 44,776,910(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD38A Gene

Variant ID Type Subtype PubMed ID
nsv461406 CNV loss 19166990
nsv546145 CNV loss 21841781
nsv998871 CNV loss 25217958

Additional Variant Information for SNORD38A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD38A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD38A Gene

Disorders for SNORD38A Gene

Additional Disease Information for SNORD38A

No disorders were found for SNORD38A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD38A Gene

Publications for SNORD38A Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD38A Gene

Sources for SNORD38A Gene

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