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Aliases for SNORD36A Gene

Subcategory (RNA class) for SNORD36A Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNORD36A Gene

  • Small Nucleolar RNA, C/D Box 36A 2 3 5
  • RNA, U36A Small Nucleolar 2 3
  • U36a Small Nucleolar RNA 3
  • U36a SnoRNA 3
  • RNU36A 3
  • U36a 3

External Ids for SNORD36A Gene

Previous HGNC Symbols for SNORD36A Gene

  • RNU36A

Previous GeneCards Identifiers for SNORD36A Gene

  • GC09P135191
  • GC09P135215
  • GC09U901074
  • GC09P135223
  • GC09P135229
  • GC09P135236
  • GC09P136218
  • GC09P136221
  • GC09P105717
  • GC09P136225
  • GC09P136229
  • GC09P136234
  • GC09P136248
  • GC09P136263
  • GC09P136285
  • GC09P133353
  • GC09P133360
  • GC09P133366
  • GC09P133378
  • GC09P133389
  • GC09P133398
  • GC09P133415

Summaries for SNORD36A Gene

GeneCards Summary for SNORD36A Gene

SNORD36A (Small Nucleolar RNA, C/D Box 36A) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD36A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD36A Gene

Genomics for SNORD36A Gene

GeneHancer (GH) Regulatory Elements for SNORD36A Gene

Promoters and enhancers for SNORD36A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I133346 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -1.6 -1639 4.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 MED22 RPL7A GC09P133386 GC09P133408 GC09P133432 GC09P133433 GC09P133437 PIR63017 SNORD24 SNORD36A
GH09I133352 Enhancer 0.9 ENCODE 550.8 +1.7 1702 0.6 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF48 ZNF280A GTF3C2 POLR2B CBX5 GC09P133386 GC09P133429 GC09P133433 GC09P133436 PIR63017 PIR45308 SNORD36A SNORD36C SETX GTF3C5
GH09I133351 Enhancer 0.6 ENCODE 550.8 +1.3 1305 0.2 CTCF KLF1 USF2 ZEB2 SMARCB1 SP1 JUND POLR2A SMARCA4 RBM39 GC09P133386 GC09P133408 GC09P133429 GC09P133433 PIR63017 PIR45308 SNORD36A SNORD36B SNORD36C GC09P133436
GH09I133416 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 11.7 +67.5 67521 3.5 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 REXO4 SURF1 SURF6 MED22 RPL7A ENSG00000273473 GTF3C5 DDX31 BRD3OS ADAMTS13
GH09I133459 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.3 +110.0 109977 2.8 HDGF CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CACFD1 SURF1 SURF2 SNORD36A SNORD36C MED22 RPL7A SNORD24 SNORD36B ADAMTS13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD36A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD36A gene promoter:

Genomic Locations for SNORD36A Gene

Genomic Locations for SNORD36A Gene
chr9:133,350,456-133,350,528
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr9:136,217,311-136,217,383
(GRCh37/hg19)

Genomic View for SNORD36A Gene

Genes around SNORD36A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD36A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD36A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD36A Gene

Proteins for SNORD36A Gene

Post-translational modifications for SNORD36A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD36A Gene

Domains & Families for SNORD36A Gene

Gene Families for SNORD36A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD36A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD36A Gene

Function for SNORD36A Gene

Phenotypes From GWAS Catalog for SNORD36A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD36A Gene

Localization for SNORD36A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD36A Gene

Pathways & Interactions for SNORD36A Gene

SuperPathways for SNORD36A Gene

No Data Available

Interacting Proteins for SNORD36A Gene

Gene Ontology (GO) - Biological Process for SNORD36A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD36A Gene

Drugs & Compounds for SNORD36A Gene

No Compound Related Data Available

Transcripts for SNORD36A Gene

mRNA/cDNA for SNORD36A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD36A Gene

No ASD Table

Relevant External Links for SNORD36A Gene

GeneLoc Exon Structure for
SNORD36A
ECgene alternative splicing isoforms for
SNORD36A

Expression for SNORD36A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD36A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD36A Gene:

SNORD36A
genes like me logo Genes that share expression patterns with SNORD36A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD36A Gene

Orthologs for SNORD36A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD36A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD36 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD36 34
  • 90 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24134 34
  • 85 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORD36 34
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD36 34
  • 77 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORD36 34
  • 79 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD36 34
  • 75 (a)
OneToMany
Species where no ortholog for SNORD36A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD36A Gene

ENSEMBL:
Gene Tree for SNORD36A (if available)
TreeFam:
Gene Tree for SNORD36A (if available)

Paralogs for SNORD36A Gene

No data available for Paralogs for SNORD36A Gene

Variants for SNORD36A Gene

Sequence variations from dbSNP and Humsavar for SNORD36A Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000288609 -- 133,350,957(+) A/G downstream_transcript_variant
rs1002764919 -- 133,349,121(+) T/C upstream_transcript_variant
rs1003519686 -- 133,348,740(+) G/C upstream_transcript_variant
rs1004175758 -- 133,350,784(+) A/G downstream_transcript_variant
rs1006039846 -- 133,349,266(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD36A Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV deletion 23290073
nsv1125319 OTHER inversion 24896259
nsv972461 CNV duplication 23825009

Additional Variant Information for SNORD36A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD36A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD36A Gene

Disorders for SNORD36A Gene

Additional Disease Information for SNORD36A

No disorders were found for SNORD36A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD36A Gene

Publications for SNORD36A Gene

  1. Evolution of U24 and U36 snoRNAs encoded within introns of vertebrate rpL7a gene homologs: unique features of mammalian U36 variants. (PMID: 9703018) Gilley J … Fried M (DNA and cell biology 1998) 2 3 58
  2. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PMID: 22268729) Liu B … Wang LS (Journal of proteome research 2012) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 3 58

Products for SNORD36A Gene

Sources for SNORD36A Gene

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