SNORD35B Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 35B

GC19P049630
GIFtS:
14
See more...

Aliases for SNORD35B Gene

Subcategory (RNA class) for SNORD35B Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD35B Gene

  • Small Nucleolar RNA, C/D Box 35B 2 3 5
  • SNORD35B 2 5 170
  • RNA, U35B Small Nucleolar 2 3
  • U35B 2 3
  • RNA, Small Nucleolar 3
  • SNODB467 177
  • SNODB245 177
  • RF00211 168
  • RNU35B 3
  • SnoRNA 3

External Ids for SNORD35B Gene

Previous HGNC Symbols for SNORD35B Gene

  • RNU35B

Previous GeneCards Identifiers for SNORD35B Gene

  • GC19P054727
  • GC19P054734
  • GC19P054741
  • GC19P054748
  • GC19P054754
  • GC19P054765
  • GC19P054773
  • GC19P054785
  • GC19P050001
  • GC19P046378
  • GC19P050006
  • GC19P050016
  • GC19P050031
  • GC19P050048
  • GC19P049498
  • GC19P049503
  • GC19P049569
  • GC19P049576
  • GC19P049585
  • GC19P049607
  • GC19P049511
  • GC19P049518
  • GC19P049524
  • GC19P049530
  • GC19P049541
  • GC19P049552
  • GC19P049556
  • GC19P049561

Summaries for SNORD35B Gene

GeneCards Summary for SNORD35B Gene

SNORD35B (Small Nucleolar RNA, C/D Box 35B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD35B Gene

  • Small nucleolar RNA SNORD35

Additional gene information for SNORD35B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD35B Gene

Genomics for SNORD35B Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD35B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD35B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD35B gene promoter:
  • AP-4
  • E47
  • FOXL1
  • GATA-1
  • NF-1
  • NF-1/L
  • STAT3
  • Tal-1beta
  • TBP

Genomic Locations for SNORD35B Gene

Genomic Locations for SNORD35B Gene
chr19:49,497,719-49,497,806
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr19:50,000,976-50,001,063
(GRCh37/hg19)
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD35B Gene

Genes around SNORD35B on UCSC Golden Path with GeneCards custom track
SNORD35B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD35B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD35B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD35B Gene

Proteins for SNORD35B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD35B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD35B Gene

Domains & Families for SNORD35B Gene

Gene Families for SNORD35B Gene

HGNC:
genes like me logo Genes that share domains with SNORD35B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD35B Gene

Function for SNORD35B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD35B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD35B Gene

Localization for SNORD35B Gene

Gene Ontology (GO) - Cellular Components for SNORD35B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD35B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD35B Gene

Pathways & Interactions for SNORD35B Gene

PathCards logo

SuperPathways for SNORD35B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD35B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD35B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD35B Gene

Drugs & Compounds for SNORD35B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD35B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD35B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F7BA1_9606 snoRNA 87 4

HGNC: 17365,

RefSeq: NR_001285,

snoDB: SNODB245,

ENA: AB028893.1:10919..11006:ncRNA,

URS00006561BE_9606 snoRNA 87 4

Ensembl: ENST00000363660 (view in UCSC) ,

Rfam: RF00211,

snoDB: SNODB467,

snOPY: Homo_sapiens300567,

SNORD35B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD35B Gene

No ASD Table

Relevant External Links for SNORD35B Gene

GeneLoc Exon Structure for
SNORD35B

No data available for mRNA/cDNA for SNORD35B Gene

Expression for SNORD35B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD35B Gene

mRNA expression in normal human tissues for SNORD35B Gene
mRNA expression by GTEx for SNORD35B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD35B

genes like me logo Genes that share expression patterns with SNORD35B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD35B Gene

Orthologs for SNORD35B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD35B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD35 31
  • 99 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD35 31
  • 86 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord35b 31
  • 82 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD35 31
  • 81 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD35 31
  • 67 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD35 31
  • 66 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves SNORD35 31
  • 63 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD35 31
  • 62 (a)
 OneToOne
Species where no ortholog for SNORD35B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD35B Gene

ENSEMBL:
Gene Tree for SNORD35B (if available)
TreeFam:
Gene Tree for SNORD35B (if available)

Paralogs for SNORD35B Gene

No data available for Paralogs for SNORD35B Gene

Variants for SNORD35B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for SNORD35B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD35B Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD35B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD35B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD35B Gene

Disorders for SNORD35B Gene

Additional Disease Information for SNORD35B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD35B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD35B Gene

Publications for SNORD35B Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 2 3
  2. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N … Morris AP (American journal of human genetics 2012) 3
  3. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (PMID: 21909109) Kim YJ … Cho YS (Nature genetics 2011) 3
  4. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y … Kamatani N (Nature genetics 2010) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD35B gene in Mastermind

Products for SNORD35B Gene

Sources for SNORD35B Gene