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SNORD35B Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 35B

GCID:
GC19P049556
GIFtS:
16
Genes Participants
UDN Logo

Aliases for SNORD35B Gene

Subcategory (RNA class) for SNORD35B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD35B Gene

  • Small Nucleolar RNA, C/D Box 35B 2 3 5
  • RNA, U35B Small Nucleolar 2 3
  • RNA, Small Nucleolar 3
  • SnoRNA 3
  • RNU35B 3
  • U35B 3

External Ids for SNORD35B Gene

ORGUL Members for SNORD35B Gene

Previous HGNC Symbols for SNORD35B Gene

  • RNU35B

Previous GeneCards Identifiers for SNORD35B Gene

  • GC19P054727
  • GC19P054734
  • GC19P054741
  • GC19P054748
  • GC19P054754
  • GC19P054765
  • GC19P054773
  • GC19P054785
  • GC19P050001
  • GC19P046378
  • GC19P050006
  • GC19P050016
  • GC19P050031
  • GC19P050048
  • GC19P049498
  • GC19P049503
  • GC19P049511
  • GC19P049518
  • GC19P049524
  • GC19P049530
  • GC19P049541
  • GC19P049552

Summaries for SNORD35B Gene

GeneCards Summary for SNORD35B Gene

SNORD35B (Small Nucleolar RNA, C/D Box 35B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD35B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD35B Gene

Genomics for SNORD35B Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD35B Gene

Promoters and enhancers for SNORD35B Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J049494 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 684.2 +1.3 1325 9.7 CLOCK FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D RPS11 SNORD35B GC19M049503 MIR150 GC19P049561 NUP62 PRR12 ALDH16A1 SNORD35A IRF3
GH19J048958 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 73.2 -533.7 -533690 10.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 FTL ENSG00000267898 GC19P048966 GC19P048967 NUP62 PTOV1-AS2 IRF3 SNORD35A SNORD35B PRR12
GH19J048871 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE dbSUPER 52.1 -621.7 -621704 8.8 FEZF1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MEF2D SSRP1 GC19M048876 PPP1R15A PRR12 SNRNP70 IRF3 GRWD1 SNORD35A PTOV1-AS2 SNORD35B PIH1D1
GH19J048644 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 60.6 -851.8 -851789 2.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B POLR2B CA11 SNORD35A GRWD1 SNORD35B ALDH16A1 NOP53-AS1 PRR12 NOP53 SNRNP70 RPS11
GH19J048612 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 46.3 -881.0 -880957 7.8 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 RPL18 FAM83E PIR55128 SPHK2 PRR12 PIH1D1 SNORD35A SNORD35B ALDH16A1 KDELR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD35B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD35B gene promoter:
  • TBP
  • STAT3
  • NF-1/L
  • NF-1
  • GATA-1
  • Tal-1beta
  • E47
  • AP-4
  • FOXL1

Genomic Locations for SNORD35B Gene

Genomic Locations for SNORD35B Gene
chr19:49,497,719-49,497,806
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr19:50,000,976-50,001,063
(GRCh37/hg19)
Size:
88 bases
Orientation:
Plus strand

Genomic View for SNORD35B Gene

Genes around SNORD35B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD35B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD35B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD35B Gene

Proteins for SNORD35B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD35B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD35B Gene

Domains & Families for SNORD35B Gene

Gene Families for SNORD35B Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD35B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD35B Gene

Function for SNORD35B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD35B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD35B Gene

Localization for SNORD35B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD35B Gene

Pathways & Interactions for SNORD35B Gene

SuperPathways for SNORD35B Gene

PathCards logo More details on SuperPathways for SNORD35B
No Data Available

Interacting Proteins for SNORD35B Gene

Gene Ontology (GO) - Biological Process for SNORD35B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD35B Gene

Drugs & Compounds for SNORD35B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD35B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD35B Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD35B Gene

No ASD Table

Relevant External Links for SNORD35B Gene

GeneLoc Exon Structure for
SNORD35B
ECgene alternative splicing isoforms for
SNORD35B

Expression for SNORD35B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD35B Gene

mRNA expression in normal human tissues for SNORD35B Gene
mRNA expression by GTEx for SNORD35B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD35B Gene:

SNORD35B
genes like me logo Genes that share expression patterns with SNORD35B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD35B Gene

Orthologs for SNORD35B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD35B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD35 34
  • 99 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD35 34
  • 86 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord35b 34
  • 82 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD35 34
  • 81 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD35 34
  • 67 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORD35 34
  • 66 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves SNORD35 34
  • 63 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORD35 34
  • 62 (a)
 OneToOne
Species where no ortholog for SNORD35B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD35B Gene

ENSEMBL:
Gene Tree for SNORD35B (if available)
TreeFam:
Gene Tree for SNORD35B (if available)

Paralogs for SNORD35B Gene

No data available for Paralogs for SNORD35B Gene

Variants for SNORD35B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD35B Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000878761 -- 49,498,269(+) C/T downstream_transcript_variant
rs1001270349 -- 49,497,009(+) A/G upstream_transcript_variant
rs1002649887 -- 49,496,802(+) C/T upstream_transcript_variant
rs1002715265 -- 49,496,404(+) A/G upstream_transcript_variant
rs1002960613 -- 49,496,653(+) C/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD35B Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD35B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD35B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD35B Gene

Disorders for SNORD35B Gene

Additional Disease Information for SNORD35B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD35B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD35B Gene

Publications for SNORD35B Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 2 3 58
  2. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N … Morris AP (American journal of human genetics 2012) 3 58
  3. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (PMID: 21909109) Kim YJ … Cho YS (Nature genetics 2011) 3 58
  4. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y … Kamatani N (Nature genetics 2010) 3 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD35B Gene

Sources for SNORD35B Gene

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